Query= MSMg01no075_l12.b1 MSMg01no075_l12.b1 CHROMAT_FILE:
MSMg01no075_l12.b1 PHD_FILE: MSMg01no075_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:27 2005
(270 letters)
>mm_chr3_127198518_127199187
Length = 670
Score = 470 bits (243), Expect = e-137
Identities = 264/275 (96%), Gaps = 7/275 (2%)
Strand = Plus / Minus
Query: 1 gaaaggttttctacacaaagaaaacctgtctccaaacaaaac-------aaaaaaagaaa 53
|||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 544 gaaaggttttctacacaaagaaaacctgtctccaaacaaaacaaaaaaaaaaaaaagaaa 485
Query: 54 ggaagagagaaagaaaatgtgctatgttgaaattcacttgcttgatatatatccattcat 113
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 484 ggaagagagaaagaaaatgtgctatgttgaaattcacttgcttgatatatattcattcat 425
Query: 114 caacttttctcctttttttaagttagagaaattcttatgttgtattttggtcgtatttcc 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 caacttttctcctttttttaagttagagaaattcttatgttgtattttggtcgtatttcc 365
Query: 174 cagactccactccattctctctggttctgttgaagatagcgtttcccagagcccaggtgg 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 cagactccactccattctctctggttctgttgaagatagcgtttcccagagcccaggtgg 305
Query: 234 cctccgacttgctttattgatacagggtttctctg 268
||||||||||| ||||| || ||||||||||||||
Sbjct: 304 cctccgacttggtttatcgagacagggtttctctg 270
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 670
Length adjustment: 9
Effective length of query: 261
Effective length of database: 661
Effective search space: 172521
Effective search space used: 172521
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no075_l12.g1 MSMg01no075_l12.g1 CHROMAT_FILE:
MSMg01no075_l12.g1 PHD_FILE: MSMg01no075_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:27 2005
(528 letters)
>mm_chr3_127103365_127104292
Length = 928
Score = 833 bits (431), Expect = 0.0
Identities = 466/483 (96%), Gaps = 10/483 (2%)
Strand = Plus / Plus
Query: 52 ctttgacctcttctagctcaacagtggctagcatacacccacacttacac------acac 105
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 250 ctttgacctcttctagctcaacagtggctggcatacacccacacttacacgcacacacac 309
Query: 106 acacacaccaataaataaataaataaataaataaataaataaataaataaataaataaaa 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 310 acacacaccaataaataaataaataaataaataaataaataaataaataaataaa----a 365
Query: 166 cacatacatatagaaacttcttgaaaaatcaaaaacaaagacaagtgatagttctgtata 225
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 366 cacacacatatagaaacttcttgaaaaatcaaaaacaaagataagtgatagttctgtata 425
Query: 226 tgtgtagaagtgggacacagcagcacggccctgagaacagccattatctgaggaagaaac 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tgtgtagaagtgggacacagcagcacggccctgagaacagccattatctgaggaagaaac 485
Query: 286 aaaacttaataatcttgcatttgagacactcagttgtgtgttttaaagcataaattattc 345
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 486 aaaacttaataatcttgcatttgagacactcagttgcgtgttttaaagcataaattattc 545
Query: 346 ataaaaggggaggaatccagccacttgggagcaccaggcaccatcagaactgatcattaa 405
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 546 ataaaaggcgaggaatccagccacttgggtgcaccaggcaccatcagaactgatcattaa 605
Query: 406 ctaattgagcagcagtaattgatcaccagtcacttcttataccaagaccctttggtgtct 465
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 606 ctaattgagcagcagtaattgatcaccagtcacttcttataccaagcccctttggtgtct 665
Query: 466 tgttctacttacattacaaattgccctggcatcgataaagcagaaacccccagccatctg 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tgttctacttacattacaaattgccctggcatcgataaagcagaaacccccagccatctg 725
Query: 526 gcc 528
|||
Sbjct: 726 gcc 728
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space: 475524
Effective search space used: 475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
