Query= MSMg01no075_n03.b1 MSMg01no075_n03.b1 CHROMAT_FILE:
MSMg01no075_n03.b1 PHD_FILE: MSMg01no075_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:35 2005
(564 letters)
>mm_chr3_79065498_79066460
Length = 963
Score = 903 bits (467), Expect = 0.0
Identities = 526/561 (93%), Gaps = 28/561 (4%)
Strand = Plus / Plus
Query: 9 tccagacctgcctg-----agctacacagcagtaatttgtctcgaaagaaagaggggcga 63
|||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 226 tccagacctgcctgagctaagctacacagcagtaatttgtctcgaaagaa--agg----- 278
Query: 64 gggggggggatcagacccgaccagatccaaccggaccgaaacctggaccccagaccccag 123
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 279 gggggggggatcagacccgaccagatccaaccggaccgaaacctggaccccggaccccag 338
Query: 124 acctgaccagactggaccgaactggactggaccagaccagaccacagtgttactcaagtc 183
||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 339 acctgacca---------------gactggaccagaccagaccacagtgttactcaagtc 383
Query: 184 acataacttgaaaggatctgagcggggctcctacataagatacaatctttcaagctgttc 243
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 384 acataacttgaaaggatctgagcagggctcctacataagatacaatctttcaagctgttc 443
Query: 244 ttaggctatctgaataaatgtttctcaatcctggtcaaacactaatccaactgtctctct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttaggctatctgaataaatgtttctcaatcctggtcaaacactaatccaactgtctctct 503
Query: 304 gaacacactgtcagacaacagagtcactgacaactgaagccacgatccctagggcaaagg 363
|||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 504 gaacacac-atcagacaacagagtcgctgacaactgaagccaggatccctagggcaaagg 562
Query: 364 ttagaaatgccaggaatgttctactctcccatgcaaaccaccctgctgtggcatccaacc 423
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 563 ttagaaatgccaggaatgttctactctcccatgcaaaccaccctgctgtggcttccaacc 622
Query: 424 agaaagctggctccctagatgagaggctgttccctagtcactgcagtctggcactggaag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 agaaagctggctccctagatgagaggctgttccctagtcactgcagtctggcactggaag 682
Query: 484 ccaagatctccagctaagcccctacacagagacagtgttagcagactccatactgaaatt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ccaagatctccagctaagcccctacacagagacagtgttagcagactccatactgaaatt 742
Query: 544 tcacaaggagtggaaataaga 564
|||| ||||||||||||||||
Sbjct: 743 tcaccaggagtggaaataaga 763
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 963
Length adjustment: 10
Effective length of query: 554
Effective length of database: 953
Effective search space: 527962
Effective search space used: 527962
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no075_n03.g1 MSMg01no075_n03.g1 CHROMAT_FILE:
MSMg01no075_n03.g1 PHD_FILE: MSMg01no075_n03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:35 2005
(564 letters)
>mm_chr3_79209122_79210083
Length = 962
Score = 1056 bits (546), Expect = 0.0
Identities = 559/564 (99%), Gaps = 2/564 (0%)
Strand = Plus / Minus
Query: 1 atcagaacacaaggagcggacagaaagcatgaagctaagagcggtacctggatatgaaag 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 762 atcagaacacaaggagcggacagagagcatgaagctaagagcggtacctggatatgaaag 703
Query: 61 ccactttccactcttgatctgttgaagaaactgtactgtggtatcccccaaccaattcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 ccactttccactcttgatctgttgaagaaactgtactgtggtatcccccaaccaattcca 643
Query: 121 caggtgtactcgtgtttgtattttgccggcaggcttctgtttgaagcaggcctccataaa 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 caggtgtactcgtgtttatattttgccggcaggcttctgtttgaagcaggcctccataaa 583
Query: 181 tatctgagatctccagttttctctaatgctggacgcttttctcctatataggcggtatgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tatctgagatctccagttttctctaatgctggacgcttttctcctatataggcggtatgc 523
Query: 241 tggtgaactttaggcaagtggtcttttacgtagtctggaccttaaggagacagaaagaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tggtgaactttaggcaagtggtcttttacgtagtctggaccttaaggagacagaaagaaa 463
Query: 301 agcatgtttaaaacctctacatatgtctctccccacacctcccttccccccccctctctg 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 462 agcatgtttaaaacctctacatatgtctctccccacacctcccttccccccc--tctctg 405
Query: 361 tgcacactcgtgggtacgtgtgtggtctcaggtatctcagcccagtttatgaggtcctgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tgcacactcgtgggtacgtgtgtggtctcaggtatctcagcccagtttatgaggtcctgg 345
Query: 421 ggatcgaaccccttcacattcttttctaaaacgcctttatttcaactgggatatcaacaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ggatcgaaccccttcacattcttttctaaaacgcctttatttcaactgggatatcaacaa 285
Query: 481 tatggcagttgttcatgttcctaggtgtgactgattataagctctttacaggttaatccg 540
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 284 tatggcagttgttcatgttcctaggtgtgactgattacaagctctttacaggttaatccg 225
Query: 541 atgaatccctattagcagctgtag 564
||||||||||||||||||||||||
Sbjct: 224 atgaatccctattagcagctgtag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 962
Length adjustment: 10
Effective length of query: 554
Effective length of database: 952
Effective search space: 527408
Effective search space used: 527408
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
