XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCTGATTCCCTTTGACCAGATGAAAGACATAAAATTCAGGAATACTTTCC
ACCAATTACAAACATACAAATAACTGTTACATAACTTACCACAAATACAC
ACTTAAAAGAGCAGATGTTAAAAGAATAAAAGCAGGCTGCTTCTGACCTG
AATATTACATGTTGTCCTCCTTAGGTAAGATGAGGAACATTTGTGTTGAC
TAGACATCAGTTCTTCTATAAAGAATTTAGAATTTGGAATTTCCATTAAA
TATCAATTGAAGAAATAGTAAATGTATGACAAACACTTATTTTGGAGTAT
TAAAAAATAGAGAACTAAGAAATCAGAGAGGTGCCATGTCTTCTAAACTT
TTGTCATTAACAACGCATGAGTTATAGTCATCACAATAAAATTTTTATTT
GTGGCAAATGTTAAGCTTTGTGCAACATTAGCTCAACTCTAAAATATTGA
GTCATGGTATCTCAACCACAAGACACTTTTTTAATGTGGTGTGTGCAATA
AAAGAATCTGGCATTTCCATTTGGGAACATGTAACAAATGTTGTATCCGT
CTAATATGTTGTTGTGACATAACTAGGAGCTTTGCAAAGGGATTTGGTGC
AAGCAGAGAATGTCATGTCAAAA

CACGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTCTGGCAAAAGACCATAAAGGTAA
TGAAGGTGTCCTCTGTTACTTTTCCTTGTCACCACCCGTCTTAGCAATAT
GGTTATGGGGAAAGGAACTACCATAATGTATTTGCATCTGAAAAATCAAA
GCTGGGTGATCAGAGGAGAAGGAAGAGGAGGAGGAAGAGAAGGAGGAGGA
GGAGGAGTTNNTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTNNTTTT
TTCTTCCCCCTCTTTTTTTTTTTTTTTCNTTNCTTTTTGCTTCTCCCNCC
CCCGCTGTTTTCTCCCCCCCCCCCCCGGTAGAGTGAGTTGGTGCTGATCT
TTGTGTTTTGTTCCCCCCCCTTTGTTTAAAATTAATAATAAATAGATGTA
TTATTTTTTTTATTTTATTTTTTTGTTTTTGTTTTATTTTTATGAGGTGG
ATGCAGTGTTTTTCTCGTTTCTCTCTCCTCGTTATATGTTTTTTCCCCAA
GTGATTTTTTACTTTTTTTGTATATATGCGATTGTATCCTGTTTACTTTT
TTATCATCACGTCTATCTTCCTATCGTTTTATCTCTGCTCCTGCATTTCC
AACCTCGACTTTTCTATTTTTTTTGTTTTTGTAAGTATTCTTCGTGGTTG
AGTAGCTATT

Query= MSMg01no075_n09.b1 MSMg01no075_n09.b1 CHROMAT_FILE:
MSMg01no075_n09.b1 PHD_FILE: MSMg01no075_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:36 2005
         (569 letters)



>mm_chr3_140765246_140766214
          Length = 969

 Score = 1015 bits (525), Expect = 0.0
 Identities = 558/569 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agatgaaagacataaaattcaggaatactttccaccaattacaaacatacaaataactgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agatgaaagacataaaattcaggaatactttccaccaattacaaacatacaaataactgt 260

                                                                       
Query: 61  tacataacttaccacaaatacacacttaaaagagcagatgttaaaagaataaaagcaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacataacttaccacaaatacacacttaaaagagcagatgttaaaagaataaaagcaggc 320

                                                                       
Query: 121 tgcttctgacctgaatattacatgttgtcctccttaggtaagatgaggaacatttgtgtt 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcttcggacctgaatattacatgttgtcctccttaggtaagatgaggaacatttgtgtt 380

                                                                       
Query: 181 gactagacatcagttcttctataaagaatttagaatttggaatttccattaaatatcaat 240
           |||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 381 gactagacatcaattcttctataaagtatttagaacttggaatttccattaaatatcaat 440

                                                                       
Query: 241 tgaagaaatagtaaatgtatgacaaacacttattttggagtattaaaaaatagagaacta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaagaaatagtaaatgtatgacaaacacttattttggagtattaaaaaatagagaacta 500

                                                                       
Query: 301 agaaatcagagaggtgccatgtcttctaaacttttgtcattaacaacgcatgagttatag 360
           |||||||||||||||| |||||||||||||||||||||||||| || | |||||||||||
Sbjct: 501 agaaatcagagaggtgtcatgtcttctaaacttttgtcattaagaatggatgagttatag 560

                                                                       
Query: 361 tcatcacaataaaatttttatttgtggcaaatgttaagctttgtgcaacattagctcaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcatcacaataaaatttttatttgtggcaaatgttaagctttgtgcaacattagctcaac 620

                                                                       
Query: 421 tctaaaatattgagtcatggtatctcaaccacaagacacttttttaatgtggtgtgtgca 480
           ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 621 tctaaaatattgagtcatggtgtctcaatcacaagacacttttttaatgtggtgtgtgca 680

                                                                       
Query: 481 ataaaagaatctggcatttccatttgggaacatgtaacaaatgttgtatccgtctaatat 540
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ataaaagaatctggcattttcatttgggaacatgtaacaaatgttgtatccgtctaatat 740

                                        
Query: 541 gttgttgtgacataactaggagctttgca 569
           |||||||||||||||||||||||||||||
Sbjct: 741 gttgttgtgacataactaggagctttgca 769


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no075_n09.g1 MSMg01no075_n09.g1 CHROMAT_FILE:
MSMg01no075_n09.g1 PHD_FILE: MSMg01no075_n09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:36 2005
         (183 letters)



>mm_chr3_140920800_140921382
          Length = 583

 Score =  344 bits (178), Expect = 2e-99
 Identities = 181/182 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctggcaaaagaccataaaggtaatgaaggtgtcctctgttacttttccttgtcaccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ttctggcaaaagaccataaaggtaatgaaggtgtcctctgttacttttccttgtcaccac 278

                                                                       
Query: 61  ccgtcttagcaatatggttatggggaaaggaactaccataatgtatttgcatctgaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 277 ccgtcttagcaatatggttatggggaaaggaactaccataatgcatttgcatctgaaaaa 218

                                                                       
Query: 121 tcaaagctgggtgatcagaggagaaggaagaggaggaggaagagaaggaggaggaggagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 tcaaagctgggtgatcagaggagaaggaagaggaggaggaagagaaggaggaggaggagg 158

             
Query: 181 ag 182
           ||
Sbjct: 157 ag 156


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 183
Length of database: 583
Length adjustment: 8
Effective length of query: 175
Effective length of database: 575
Effective search space:   100625
Effective search space used:   100625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)