Query= MSMg01no076_c14.b1 MSMg01no076_c14.b1 CHROMAT_FILE:
MSMg01no076_c14.b1 PHD_FILE: MSMg01no076_c14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:02 2005
(680 letters)
>mm_chr3_124995186_124996264
Length = 1079
Score = 1017 bits (526), Expect = 0.0
Identities = 562/574 (97%), Gaps = 3/574 (0%)
Strand = Plus / Minus
Query: 5 cggaattctgtgatttataccagttatttgtgtacatcacagctgaggagattccgatct 64
|||||||| ||||||||||| | ||||||||||||||||||||||||||||||| |||||
Sbjct: 571 cggaattcggtgatttatacaatttatttgtgtacatcacagctgaggagattctgatct 512
Query: 65 gtctcatattcacaattggtatttgtttaggttttgcaatacaacaacatcaagaagctg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gtctcatattcacaattggtatttgtttaggttttgcaatacaacaacatcaagaagctg 452
Query: 125 actcctctatgttttgatttttctcttggttatttttgaaaacttcagagaatgggggca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 actcctctatgttttgatttttctcttggttatttttgaaaacttcagagaatgggggca 392
Query: 185 taatataaagcacccaaatcatattaagttggtatttaggatgatgattccatactccat 244
||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 391 taatacaaagcacccaaatcatactaagttggtatttaggacaatgattccatactccat 332
Query: 245 acatttatcacaccattatttaatgaaaatatagaccatacaatcgtaatccagaggtat 304
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 acatttatcacgccattatttaatgaaaatatagaccatacaatcgtaatccagaggtat 272
Query: 305 agaaaagatcagtccatttagagatattttcataagaattctcttcaaaaattatgtttg 364
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 271 agaaaagatcagtccatttagagatattttcataagaattctcttc-aaaattatgtttg 213
Query: 365 agtaaaagtattatttttttaattttagaaatatttgaaataatttagtgtgttctgaac 424
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 agtaaaagtatta-ttttttaattttagaaatatttgaaataatttagtgtgttctgaac 154
Query: 425 taatatcactgtgtgtgcatgtgtgcagcacaacacacgtgtgtaggtaagaacgagttt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 taatatcactgtgtgtgcatgtgtgcagcacaacacacgtgtgtaggtaagaacgagttt 94
Query: 485 gggttgttgatggtctcttccaccattatataggtttcagagatcaagaaattactcttt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 gggttgttgatggtctcttccaccattatataggtttcagagatcaagaaattactcttt 34
Query: 545 catcattttcgttgtgaggaaccaactcactgaa 578
||||||||||||||||||||||| ||||||||||
Sbjct: 33 catcattttcgttgtgaggaacc-actcactgaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1079
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1069
Effective search space: 716230
Effective search space used: 716230
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no076_c14.g1 MSMg01no076_c14.g1 CHROMAT_FILE:
MSMg01no076_c14.g1 PHD_FILE: MSMg01no076_c14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:02 2005
(654 letters)
>mm_chr3_124937443_124938496
Length = 1054
Score = 1226 bits (634), Expect = 0.0
Identities = 649/654 (99%)
Strand = Plus / Plus
Query: 1 ataatggccttacacttttaacaggaggtaaagtgcgctaatgaaatcataaaaatgaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataatggccttacacttttaacaggaggtaaagtgcgctaatgaaatcataaaaatgaag 260
Query: 61 gcagtatgcctttggccaaaccagtctttatgcttgcctgagaaccttagcttaggaaac 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcagtatgcctttgaccaaaccagtctttatgcttgcctgagaaccttagcttaggaaac 320
Query: 121 aatcactttattcatctatagaataaaatacttgcaactttcaacgtaagaaatgggtgg 180
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 aatcactttattcatctataggataaaatacttgcaaatttcaacgtaagaaatgggtgg 380
Query: 181 aacttaggggcataattaggataattagtgtgtaactattttacattattgtattgttgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacttaggggcataattaggataattagtgtgtaactattttacattattgtattgttgt 440
Query: 241 acattataagcacataatgaatttcagctacatgtaatagaattgtttgtaatagagtca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acattataagcacataatgaatttcagctacatgtaatagaattgtttgtaatagagtca 500
Query: 301 tgacaaacacttaaagtacaacattggttattaaaattaacataggttaattttagcagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgacaaacacttaaagtacaacattggttattaaaattaacataggttaattttagcagt 560
Query: 361 aattttattaaaagttttaataaatgatcttttatataaagtcattggaccccatgcttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aattttattaaaagttttaataaatgatcttttatataaagtcattggaccccatgcttc 620
Query: 421 aattaataatataacatcaaatatactgtttaatatgcaatcatcattaaataaacattt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aattaataatataacatcaaatatactgtttaatatgcaatcatcattaaataaacattt 680
Query: 481 gtattttagagcaaaactataaaatgcatgttctattgaaatggaattttaagtaaggaa 540
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 681 gtattttagagcaaaactataaaatgcgtgttctattgaaatggaattttaagtaaggaa 740
Query: 541 tttgaattaaacatagcattttggtttctctggtatctgaagttggtaggttatcataaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tttgaattaaacatagcattttggtttctctggtatctgaagttggtaggttatcataaa 800
Query: 601 tcctcaaacgaggaccagcaccaactatcataaatttattcagcatgagctttc 654
|||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 801 tcctcaaacgaggaccagaaccaactatcataaatttattcagcatgagctttc 854
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space: 672336
Effective search space used: 672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
