Query= MSMg01no076_i08.b1 MSMg01no076_i08.b1 CHROMAT_FILE:
MSMg01no076_i08.b1 PHD_FILE: MSMg01no076_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:31 2005
(620 letters)
>mm_chr3_120273599_120274618
Length = 1020
Score = 1135 bits (587), Expect = 0.0
Identities = 612/625 (97%), Gaps = 9/625 (1%)
Strand = Plus / Plus
Query: 5 gaattctcattcatatttcacagacttctctctctggccctgtgcatcagcagagcagaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 gaattctcattcatatttcacagacttctctctctggccctgtgcatcagcagagcagaa 255
Query: 65 tgtctgtggaacaggtggtctccatgtacacaccccactcttagccctgtgccaggctta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tgtctgtggaacaggtggtctccatgtacacaccccactcttagccctgtgccaggctta 315
Query: 125 tgcttccctctctctcttcatgaaaacaggcatgctgaaaatatgtttgcagatggcaca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tgcttccctctctctcttcatgaaaacaggcatgctgaaaatatgtttgcagatggcaca 375
Query: 185 gaaatgctgtgcacattatagccatcatgtcaaagcaggagaacttcagccataacaagt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gaaatgctgtgcacattatagccatcatgtcaaagcaggagaacttcagccataacaagt 435
Query: 245 aaaaacaaaaagcactgaaaagtccacccaccccc-acccctgccacacacacacacaca 303
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 436 aaaaacaaaaagcactgaaaagtccacccaccccccacccctgccacacacacacacaca 495
Query: 304 cacacac--------ttccaccgaacatagttattcccatgccaagatacggtgagtcac 355
||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 cacacacacacacacttccaccgaacatagttattcccatgccaagatacggtgagtcac 555
Query: 356 caacatattttgttcagcttctttcaaagaggagaggggtgggtgtgacaggcgagaaga 415
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 556 caacacattttgttcagcttctttcaaagaggagaggggtgggtgtgacaggcgtgaaga 615
Query: 416 caggaattcttggactaggatcaggtgtcgaatgctggaacaaaggtttttctgtgcctc 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 caggaattcttggactaggatcaggtgtcgaatgctggaacaaaggtttttctgtgcctc 675
Query: 476 ttgattttgaaacgggaagctcttgcttcctcggtaaaggagtagaagagtgagaagagg 535
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 676 ttgattttgaaacgggaagctcttgcttcctcagtaaaggagtagaagagtgagaagagg 735
Query: 536 aaaacgtggggcgaaagaaatgtcacccacattcccacttggatgtctgctccgtaactg 595
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 736 aaaacgtggggcgaaagaaatgtcacccacattcccacttggatgtctggtccgtaactg 795
Query: 596 attttgtctggttttcattttagca 620
|||||||||||||||||||||||||
Sbjct: 796 attttgtctggttttcattttagca 820
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space: 616100
Effective search space used: 616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no076_i08.g1 MSMg01no076_i08.g1 CHROMAT_FILE:
MSMg01no076_i08.g1 PHD_FILE: MSMg01no076_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:31 2005
(615 letters)
>mm_chr3_120368604_120369616
Length = 1013
Score = 1114 bits (576), Expect = 0.0
Identities = 605/616 (98%), Gaps = 4/616 (0%)
Strand = Plus / Minus
Query: 1 atgtggtgggaggagagaactggctcccataagttgtcctttgatctctgttcatgcaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889 atgtggtgggaggagagaactggctcccataagttgtcctttgatctctgttcatgcaca 830
Query: 61 gtggcatgcacagacagcccatccccac-aaaaaatgtttaaaaagtctttaataaaaga 119
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 829 gtggcatgcacagacagcccatccccacaaaaaaatgtttaaaaagtctttaataaaagg 770
Query: 120 aaagaacagatttggtgacagatgacaactccaagggggaaatgatgtgctatttttttt 179
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 769 aaagaacagatttggtgacagatgacaactccaagggggaaatgatgtgc---ttttttt 713
Query: 180 tgtgaatgtaactttatgtcgcttttcaaactgacaatgaaaatgaacaattttagtaag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 tgtgaatgtaactttatgtcgcttttcaaactgacaatgaaaatgaacaattttagtaag 653
Query: 240 ttcttccttcaattctccaaatgtaattttgagatagagctataaagcacataagtgagc 299
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 652 ttcttccttcaattctccaaatgtaattttgagatagaactataaagcacataagtgagc 593
Query: 300 ttaatctgataattaagccgagctattttccatgtacttaatttgaatattcttgaacag 359
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 592 ttaatctgataattaagccgaactattttccatgtacttaatttgaatattcttgaacac 533
Query: 360 agataaaaattattatgtgtacacaaagtggaatcatctgacttcacaataagtaacttt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 agataaaaattattatgtgtacacaaagtggaatcatctgacttcacaataagtaacttt 473
Query: 420 taaattgccagtggtgtcatcttactctctactaggtacaaatacatacatataaatggt 479
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 472 taaattgccagtggtgtcatcttattctctactaggtacaaatacatacatataaatggt 413
Query: 480 cttcttggcaccaatgagttaagaaaaagacttgcagccatttgaaagatgctaattgtg 539
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 412 cttcttggtaccaatgagttaagaaaaagacttgcagtcatttgaaagatgctaattgtg 353
Query: 540 tgaaatactacaatgtcagtatcttttcaatcagcatctattaagtatacatttcttctc 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tgaaatactacaatgtcagtatcttttcaatcagcatctattaagtatacatttcttctc 293
Query: 600 ctagatattatgagaa 615
||||||||||||||||
Sbjct: 292 ctagatattatgagaa 277
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1013
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1003
Effective search space: 606815
Effective search space used: 606815
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
