Query= MSMg01no076_m18.b1 MSMg01no076_m18.b1 CHROMAT_FILE:
MSMg01no076_m18.b1 PHD_FILE: MSMg01no076_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:54 2005
(208 letters)
>mm_chr3_53835154_53835761
Length = 608
Score = 342 bits (177), Expect = 7e-99
Identities = 198/209 (94%), Gaps = 8/209 (3%)
Strand = Plus / Plus
Query: 6 gaattctcaattcctttcccctgctaatcctttctttaaatagctctaaatttgcatgag 65
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctcaattcctttttcctgctaatcctttctttaaatagctctaaatttgcatgag 265
Query: 66 ttgggatgtattcaaaaagtgactgaatacaaaataatccctttaaatttttttttgttt 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ttgggatgtattcaaaaagtgactgaatacaaaataatccctttaaatttttttttgttt 325
Query: 126 ttattattcattgtttgcatatgtaagggcatgcgcgcgtgc--gc------gcgcacac 177
||||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct: 326 ttattattcattgtttgcatatgtaagggcatgcgcgcgcgcacgcacgcacgcgcacac 385
Query: 178 acacacacacacacacacacacacacaca 206
|||||||||||||||||||||||||||||
Sbjct: 386 acacacacacacacacacacacacacaca 414
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 208
Length of database: 608
Length adjustment: 9
Effective length of query: 199
Effective length of database: 599
Effective search space: 119201
Effective search space used: 119201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no076_m18.g1 MSMg01no076_m18.g1 CHROMAT_FILE:
MSMg01no076_m18.g1 PHD_FILE: MSMg01no076_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:54 2005
(616 letters)
>mm_chr3_54016725_54017740
Length = 1016
Score = 1176 bits (608), Expect = 0.0
Identities = 614/616 (99%)
Strand = Plus / Minus
Query: 1 catttccttgtctccttaaaggttcttacagagctccgtggacctcccaaggaagtgatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 catttccttgtctccttaaaggttcttacagagctccgtggacctcccaaggaagtgatg 757
Query: 61 cacccgagattaatgacatatccatgtccattgtcagctttgcaaatgattttaattatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 cacccgagattaatgacatatccatgtccattgtcagctttgcaaatgattttaattatt 697
Query: 121 catcgttaatatatttgctttaagttacattaagcatggattgatagaagcctatgtaaa 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 696 catcgttaatatatttgctttaagttacattaagcatggattgatggaagcctatgtaaa 637
Query: 181 gtcctgcttcaaatgaaataccctgacaaatagaaatgccattgattttggggagttcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 gtcctgcttcaaatgaaataccctgacaaatagaaatgccattgattttggggagttcag 577
Query: 241 ggggcacatgggaaatacaacaccatgcgaactttgatggcagagtttagagatagggat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ggggcacatgggaaatacaacaccatgcgaactttgatggcagagtttagagatagggat 517
Query: 301 atttgcatcacatgaaataggttatggacaaacacatctcagctagctagctgacatcgt 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 516 atttgcatcacatgaaataggttatggacaaacacatctcagctagttagctgacatcgt 457
Query: 361 gtaaatgtgcctggacagctaacacatatgaaacaccatgctctatggtctgtgctgaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gtaaatgtgcctggacagctaacacatatgaaacaccatgctctatggtctgtgctgaga 397
Query: 421 acttgtgtcccaccttggtcaatcttcaaggttattattaatttttttagaaaaatgttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 acttgtgtcccaccttggtcaatcttcaaggttattattaatttttttagaaaaatgttc 337
Query: 481 tgttttatacaaatgagaatggcaggtcttagtgaaattatttaagaatcaggtccatgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgttttatacaaatgagaatggcaggtcttagtgaaattatttaagaatcaggtccatgg 277
Query: 541 tcataaatccatgcagcctgactttaaattatttgatatactatacatttctgtttgaaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tcataaatccatgcagcctgactttaaattatttgatatactatacatttctgtttgaaa 217
Query: 601 atttattttttattaa 616
||||||||||||||||
Sbjct: 216 atttattttttattaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space: 609636
Effective search space used: 609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
