BAC Information

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BAC

Clone NameMSMg01-078B09
Chromosome3 (Build37)
Map Location 87,655,084 - 87,655,444
singlet/doubletsinglet
Overlap geneSh2d2a
Upstream geneDclk2, EG625055, Cd1d2, Cd1d1, LOC667897, Kirrel1, LOC100042355, Msr2, Cd5l, Fcrl1, Fcrl5, Etv3, EG546801, Arhgef11, EG625281, 3110045G13Rik, Ntrk1, Insrr
Downstream genePrcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078B09.T7 (MSMg01no078_b09.b1)MSMg01-078B09.TJ (MSMg01no078_b09.g1)
ACCAG299505AG299506
length681744
length of high quality
(start - end)
365 (44 - 408)---
definitionCHROMAT_FILE: MSMg01no078_b09.b1 PHD_FILE: MSMg01no078_b09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:18 2005CHROMAT_FILE: MSMg01no078_b09.g1 PHD_FILE: MSMg01no078_b09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCATTTGGACCTAGGAAGCCTTGAGTAGATCGTAGGTCTCTGGAAGT
GGAGGGCGCATGGAGCCCTTCGTGAAGCAGGCCTTAATGCTGAGCTAAAA
ACATAACTACTGTGGGGTAGCTAGAAGGGAAGGTTCGTCTCTCCTGTGGT
GGTCTCTGCCCCTGAACATGTAGCTTCTGTCTTCATATATTAAGCTTCTT
GAGCCTGAAGAAAAAAGACCCAGCAATCATAGAGGTTGGTCCCCAGACCG
ATTGCTTTGAAGGCAAGGACTCCTAAAGCCTAAAGCCTCCTAGTTTTGCA
ACCATAAGTACAAATGAGACTGTCTTGGCCCTGAATTCCAGATAGTTGGT
TGTTAGACAAACGCCCCACAATATTTTGTTTCTGTCCACTGTCCCCATTC
CTCTTCTACGACTCCACTCCACCTCTCTCATAGAGAGTCCAGCCCATTGT
ACACTTCTTCCTCAGTCTACTTTCATCCTCTCAGACCTAATTGCTGATCT
GGTTCTACTTGATGCCCCATCTCCGCCCTTATCTTTCATATCCATCTCTA
TTTAGTTTATATCCGAAATCCTCTCTACTCTTATTATATCCGCATTCATA
TCATTTTCCCTATATTCCTCTCCTCACTTTN
NNNCCCAATGACAANGNNNTAANNNCCTGNCGNCCGCCTGTTCGACAACA
TTTANNTNGACACTATANAAAGCACCCCNCGNAAATNTCAAAGNCCCCCT
TCAACCCAAACNANAAAANNNNNNNNCNNCCCNNCNNCCCNNNNCCCNNC
CCCCCCCCCNCCCNNNCNNNCCCCCCCCCCCCCNCCCCCCCCCNNNNNNN
NNNNNNNNNNNNNNGGGGTTCCATTTTTGCCCCCTCCANNNAAAATCCCT
GGNTNAAAATTAAANCCCTTCCCCTCCAAAAAANCCCCCCCCTTTCGTTT
TCCCCCCCTGNNCCCCACACCCCCAAAAATTTGACCCCCCACCCCACAAA
ANCCTAACCCCTCAACAAATTTCTTTTTTTCCACCCTTCCCCCTTGAAAA
CCCAAACCCGGATCCCCCGGGACCCACACCAAAAAAAAAAACGACAAAAA
ACCACCCCCCCCCTCCNCCNACAAAAANCGAAAAAAAACCCCCCCCCCCC
CCCCCAAAAAAAAAAAAAAAGAGTATCCCCCCCAAAAAAAAAACCCCCCC
AAAAAACCCCCCCCCCCAAAAAAAATACACCCCCCCTTCCACCCACCCCC
CCCCACACACACCCCACATCCCCTACCCCACACCCCCAACACACCCCCNC
CCCACACACCCAAAAACCCCACCTCCCCCCCTCCCCACCCCACCCACACC
CTCCACCCCCCAAACAACCAACAACACAATCACCAAAAACAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_b09.b1 MSMg01no078_b09.b1 CHROMAT_FILE:
MSMg01no078_b09.b1 PHD_FILE: MSMg01no078_b09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:18 2005
         (365 letters)



>mm_chr3_87654880_87655644
          Length = 765

 Score =  690 bits (357), Expect = 0.0
 Identities = 360/361 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcatttggacctaggaagccttgagtagatcgtaggtctctggaagtggagggc 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcatttggatctaggaagccttgagtagatcgtaggtctctggaagtggagggc 264

                                                                       
Query: 65  gcatggagcccttcgtgaagcaggccttaatgctgagctaaaaacataactactgtgggg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcatggagcccttcgtgaagcaggccttaatgctgagctaaaaacataactactgtgggg 324

                                                                       
Query: 125 tagctagaagggaaggttcgtctctcctgtggtggtctctgcccctgaacatgtagcttc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tagctagaagggaaggttcgtctctcctgtggtggtctctgcccctgaacatgtagcttc 384

                                                                       
Query: 185 tgtcttcatatattaagcttcttgagcctgaagaaaaaagacccagcaatcatagaggtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgtcttcatatattaagcttcttgagcctgaagaaaaaagacccagcaatcatagaggtt 444

                                                                       
Query: 245 ggtccccagaccgattgctttgaaggcaaggactcctaaagcctaaagcctcctagtttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggtccccagaccgattgctttgaaggcaaggactcctaaagcctaaagcctcctagtttt 504

                                                                       
Query: 305 gcaaccataagtacaaatgagactgtcttggccctgaattccagatagttggttgttaga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcaaccataagtacaaatgagactgtcttggccctgaattccagatagttggttgttaga 564

            
Query: 365 c 365
           |
Sbjct: 565 c 565


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 765
Length adjustment: 9
Effective length of query: 356
Effective length of database: 756
Effective search space:   269136
Effective search space used:   269136
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)