Query= MSMg01no078_c20.b1 MSMg01no078_c20.b1 CHROMAT_FILE:
MSMg01no078_c20.b1 PHD_FILE: MSMg01no078_c20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:25 2005
(249 letters)
>mm_chr3_106773129_106773777
Length = 649
Score = 456 bits (236), Expect = e-133
Identities = 245/248 (98%), Gaps = 2/248 (0%)
Strand = Plus / Plus
Query: 3 gccccatttcagttgttcaggacccacatcaaggtcaagctgcacatgtactacatatga 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gccccatttcagttgttcaggacccacatcaaggtcaagctgcacatgtactacatatga 262
Query: 63 gcagggaggcctaggtccagcctgtgtatattccctgtaaaacccaaattcttcatcaaa 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gcagggaggcctaggtccagcctgtgtatattccctgtaaaacccaaattcttcatcaaa 322
Query: 123 atgctgag-taggtacatgccattaaatcacagcattagctgcctttaattttctgagtt 181
|||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 323 atgctgagct-ggtacatgccattaaatcacagaattagctgcctttaattttctgagtt 381
Query: 182 cagtctcttccccacagaagtcataaattaatgactttgcgtgatgactgatctaggaca 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cagtctcttccccacagaagtcataaattaatgactttgcgtgatgactgatctaggaca 441
Query: 242 agcaggct 249
||||||||
Sbjct: 442 agcaggct 449
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no078_c20.g1 MSMg01no078_c20.g1 CHROMAT_FILE:
MSMg01no078_c20.g1 PHD_FILE: MSMg01no078_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:25 2005
(606 letters)
>mm_chr3_106888762_106889767
Length = 1006
Score = 1143 bits (591), Expect = 0.0
Identities = 603/607 (99%), Gaps = 1/607 (0%)
Strand = Plus / Minus
Query: 1 agttgagtatatctaagtgacaatatgcctaagatctgtaatagg-aaaaaaaaacctga 59
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 849 agttgagtatatctaagtgacaatatgcctaagatctgtaataggaaaaaaaaaacctga 790
Query: 60 acatagctccagtgtccatctctgagcagctcataaactatgttaagttgaattgtattt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 acatagctccagtgtccatctctgagcagctcataaactatgttaagttgaattgtattt 730
Query: 120 atacaaatgcattaaatgctggacagatggctcagtgggtgaaggtattagccgtgcaag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 atacaaatgcattaaatgctggacagatggctcagtgggtgaaggtattagccgtgcaag 670
Query: 180 ccagatgacctgagttcaagtcatagacccggcataaaggagccaggtataatgctgggc 239
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 669 ccagatgacctgagttcaagtcatagacccggcataaaggagccaggtatagtgctgggc 610
Query: 240 ctctgtaatctcagccttccctccgacaagatagaaggcagtggcaggagactcaaagat 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ctctgtaatctcagccttccctccgacaagatagaaggcagtggcaggagactcaaagat 550
Query: 300 gctctggtctggatgctcaaaggccaaccagcctcagctattcagcacagcagcctcaac 359
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 549 gctctggtctggatgctcaaaggtcaaccagcctcagctattcagcacagcagcctcaac 490
Query: 360 aagaagagtctcttgcctcaatcaggtggttaacaaaaaccaactttcaaaaagttgtcc 419
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 489 aagaagagtctcttgcctcaatcaggtggttaacaaaaaccaactctcaaaaagttgtcc 430
Query: 420 tctgacctccatgtctgtgccacgacatgtgcacacatgtataataaagaggcacataat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tctgacctccatgtctgtgccacgacatgtgcacacatgtataataaagaggcacataat 370
Query: 480 aatataaaaataatatttaaaaattaagagtatttctgttttatataggaaagtgttcta 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aatataaaaataatatttaaaaattaagagtatttctgttttatataggaaagtgttcta 310
Query: 540 gatatatgataaagcaaataaaaggaacacaaagacaatatatttagtatgttacttttg 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gatatatgataaagcaaataaaaggaacacaaagacaatatatttagtatgttacttttg 250
Query: 600 tggcata 606
|||||||
Sbjct: 249 tggcata 243
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space: 593616
Effective search space used: 593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
