BAC Information

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BAC

Clone NameMSMg01-078E10
Chromosome3 (Build37)
Map Location 77,707,900 - 77,708,142
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041625, LOC100041635, Dnmt3a-ps1
Downstream geneEG626461, LOC667526, LOC626479, LOC100041691, LOC383883
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078E10.T7 (MSMg01no078_e10.b1)MSMg01-078E10.TJ (MSMg01no078_e10.g1)
ACCAG299650AG299651
length720712
length of high quality
(start - end)
473 (44 - 516)243 (68 - 310)
definitionCHROMAT_FILE: MSMg01no078_e10.b1 PHD_FILE: MSMg01no078_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:33 2005CHROMAT_FILE: MSMg01no078_e10.g1 PHD_FILE: MSMg01no078_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGGA
ATTCTTTGTTTACCACTGTACCCCATTTTTATTAGGGCAATTTGTTTCTA
TGGAGTCTAACTTCTTGAGTTCTTTGTATATGATAGAGCGGTCTCCTGGA
AGGCTCTGCCAGTGCCTGACATATATAGAAGTAGATGCTCACAGCCATTC
ATTGGACTTAACACAGGATCCTCAATGAAGGAGCTAGAGGAGCTAGAGAA
AGAACCTAAGGAGTTGAAGGGATTTGCAGCCCGTGGAAGAACAACAATAT
GAACCAACCAGTACCCCCAGGGCTACCATGGACTAAACCACCAACCAACA
AGTACACATGGTGAGACTCATGGCTCCAGCTGCATATGTAGCAGAGGATG
GCCTAGTCAGACATCAGTGGAAGGAGAGTCTCTTGGTCCTATGAAGGCTC
TATGCCCCAGGGTAGGGGAATGCTAAGGCCAGGAATTGGGAGTGGGTGTG
TTGGTGAGCAGGGGGAGGTGATAAATGCGCCCGCCTCCTTTTTTTTCGCT
GTTTTTTCTTCCCCTTTTTTCATTCTCCTTTCTATTTCCCCCCCCCCCCC
CTATTCCCCCCCTTCTCCTTCTCTTCCCTTTCCCTCTCCCCACGTTTTTT
CCCCTCTTTTCCCTTCTTCTATTATTTATTCCTTCCTACTAAATTTTTTT
CTCCTCCCCTTTCCCACCTT
ATGTGGGAGGCCTGGCGGCCGCCTTTTTCTCACTGGGGGTGACCTATAGA
AGTTTCCAAAAAATTCCTATGTGATTTCATTAATGTTTACTATAAAATAG
GGTCTTCATTCATACGCTGAGAACAGTGAACCAGGGATATAGGTAATACA
GAGGTATATTGGGAAGAACTGATAAGATAATGAATAGGGCTATAAAAACA
TGAGAAAGCAAGGATTGGAGAAATAGAAATCATTGCCATGTATATAATGT
TGACATTAATCTCATTAATCTGAAATGAGACTTATCTCAGGGATTAGATA
ATAGTAGCTACCGTGCCTATAACGGGGATTAGCGTTTACAGACAGCCCTT
TCCAAAAAGTCTGCCTCTAACCAGCTGACCAAAGCAGACTTCACATGTCT
AGGTATTATTGCAGAATGATTTCTGGAGGAAGATGTGGTGAGGTACAGTC
CTACTGCAGTCTATGGAGCCATTATTACCATTTGCATACAATGGAGTTGA
TGCATGATGGTGTCATAAAACCACATCATTCTATCTAGTGCTCTGTATAT
TGCGCAGTTTTACACACGTACCTCAATTCTTAAAATCCAAATCCATGTAG
AAATTATTCTTACCTCATTTGTGTTTTAAATATATTTATGCCAGATTTTG
TTCTTGTGTCCATAATGGTTTCCAAGGCCTTTGCTTTATTCATGATACCT
AAAACTTGTGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_e10.g1 MSMg01no078_e10.g1 CHROMAT_FILE:
MSMg01no078_e10.g1 PHD_FILE: MSMg01no078_e10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:33 2005
         (243 letters)



>mm_chr3_77707700_77708342
          Length = 643

 Score =  455 bits (235), Expect = e-132
 Identities = 241/243 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatgtgatttcattaatgtttactataaaatagggtcttcattcatacgctgagaacagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 443 tatgtgatttcattaatgtttactataaaatagggtcttcattcataagctgagaacagt 384

                                                                       
Query: 61  gaaccagggatataggtaatacagaggtatattgggaagaactgataagataatgaatag 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gaaacagggatataggtaatacagaggtatattgggaagaactgataagataatgaatag 324

                                                                       
Query: 121 ggctataaaaacatgagaaagcaaggattggagaaatagaaatcattgccatgtatataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ggctataaaaacatgagaaagcaaggattggagaaatagaaatcattgccatgtatataa 264

                                                                       
Query: 181 tgttgacattaatctcattaatctgaaatgagacttatctcagggattagataatagtag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tgttgacattaatctcattaatctgaaatgagacttatctcagggattagataatagtag 204

              
Query: 241 cta 243
           |||
Sbjct: 203 cta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)