Query= MSMg01no078_m15.b1 MSMg01no078_m15.b1 CHROMAT_FILE:
MSMg01no078_m15.b1 PHD_FILE: MSMg01no078_m15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:13 2005
(462 letters)
>mm_chr3_56589289_56590151
Length = 863
Score = 321 bits (166), Expect = 6e-92
Identities = 180/188 (95%), Gaps = 7/188 (3%)
Strand = Plus / Minus
Query: 5 gaattcctactc----ttgcatcacagggatatgtacaaagactgtaagaagcaaaattg 60
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gaattcctactcaggat---atcacagggatatgtacaaagactgtaagaagcaaaattg 333
Query: 61 gaaacaaccagattgtctatcttcagttgaatggctaaggttattttaatactgacgtga 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 332 gaaacaaccagattgtctatcttcagttgaatggctaaggttattttagtactgacgtga 273
Query: 121 cgatatggaataaatagaatatgatcaataaacacacttgcaattttataataaaggaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 cgatatggaataaatagaatatgatcaataaacacacttgcaattttataataaaggaaa 213
Query: 181 gaaacact 188
||||||||
Sbjct: 212 gaaacact 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 863
Length adjustment: 10
Effective length of query: 452
Effective length of database: 853
Effective search space: 385556
Effective search space used: 385556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no078_m15.g1 MSMg01no078_m15.g1 CHROMAT_FILE:
MSMg01no078_m15.g1 PHD_FILE: MSMg01no078_m15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:13 2005
(302 letters)
>mm_chr3_56473717_56474418
Length = 702
Score = 561 bits (290), Expect = e-164
Identities = 299/302 (99%)
Strand = Plus / Plus
Query: 1 atttattctgcaagtgaaagtcctctctgaccatttgtctgaaaagatggaagaaatact 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttattctgcaagtgaaactcctctctgaccatttgtctgaaaagatggaagaaatact 260
Query: 61 gaaatccccatcacttatactggtgcttagacaaagaaaaaaaatattgtttcatcagtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaatccccatcacttatactggtgcttagacaaagaaaaaaaatattgtttcatcagtc 320
Query: 121 aagtgaactatattagagaaattgatgttatgagattggagatctctgtcttttctggtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagtgaactatattagagaaattgatgttatgagattggagatctctgtcttttctggtt 380
Query: 181 ttttgaaaacactattatccagtcatgcactttagatttatgaatttgctgactatttgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttgaaaacactattatccagtcatgcactttagatttatgaatttgctgactatttgt 440
Query: 241 ttaagaggtctggccattctgcaaaggaaccaattgtgtgtgaccatcacaattgttccc 300
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 ttaagaggtctgtccattctgcaaaggacccaattgtgtgtgaccatcacaattgttccc 500
Query: 301 ca 302
||
Sbjct: 501 ca 502
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 702
Length adjustment: 9
Effective length of query: 293
Effective length of database: 693
Effective search space: 203049
Effective search space used: 203049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
