BAC Information

Click to search

BAC

Clone NameMSMg01-078O19
Chromosome3 (Build37)
Map Location 83,688,815 - 83,771,473
singlet/doubletdoublet
Overlap geneD930015E06Rik
Upstream geneLrat, Fgg, Fga, Fgb, Plrg1, EG627094, Dchs2, 1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522, Tlr2
Downstream geneMnd1, Trim2, EG624713, 6330505N24Rik, Arfip1, EG667788, EG627369, Tigd4, Tmem154, LOC624889, Fbxw7, Dear1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078O19.T7 (MSMg01no078_o19.b1)MSMg01-078O19.TJ (MSMg01no078_o19.g1)
ACCAG300140AG300141
length713719
length of high quality
(start - end)		632 (37 - 668)587 (74 - 660)
definitionCHROMAT_FILE: MSMg01no078_o19.b1 PHD_FILE: MSMg01no078_o19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:24 2005CHROMAT_FILE: MSMg01no078_o19.g1 PHD_FILE: MSMg01no078_o19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,688,815 - 83,689,441)(83,770,887 - 83,771,473)
sequence
AATTTGCGGCGCTAAACGACTCCTATAGTCAGAGATCCGCGGAATTCAAG
GAGCTTGTGTCAACCCAGCCTGAAGCAGATGACCAAGTGTGTGAGGATGC
TGAACCTGCAGCCCCGAGCCTGTGCTGACTGAGGATCCGAAGGACTTTCC
CAGACTCTGCATTTCTCACAGGACCGATATGAGGAGAACAACAATTGCAG
AAAGAGAAGCATCTGACCAGAAGTGTTTTAACAGGGTAGGGCTGGCCATA
GTTTATTCTCCGGGCAACAGAAGACACAGCAAGTCCCTGACAGGCTCATG
TAAGGCCACTAGCTAAGCTGGGTTTACATCATAGCAAAGAACTCATGGTC
ACATTGTCACTGCAGGACTGTCCCCATGTCCTCAGTACTGTCCTGGTATT
AGCCTGAGAGTCTGATAGGCTGAGACATGTGTAGCTGGTTACAGGGCAGT
GTTGCTTCATCCTTTCTAATAGATTCTACAGTCAGCTTTCCAGACACGGG
TGTGGCCTAAATGTGGGTTGAGCATTAGCTAAACTGAGGTTTAAATCCTC
ATCTGTGGTGTCTCTGACGTGCTGTGTGATTTCAGGGAAGTTGCTCAAGA
TTTCAAAACCCAGTGTGCAGCACACATGCCTGACAGCACCTACCCCCTCA
CCAGGCCCCCTCTTCCTCACACCCCTTTATGCCATCAAGGTCTCCCTATT
TTCCTTGCTTTCT

CGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTGGTAAGTCTTTGGGTGTTTTTTGG
AACAAGTTTGATTATTTTATAATGGAAAAATGGAATACTGATGATCTCTG
AATCCTTTTAGGCCAGATGCAATTGTTTGCCTTCCCTGCTGTACTTTCAG
GCTGGAAGTTGTACTCTATTGATCGTTCCTGGGTAGTTGTGGACATTTAG
GCAGAGAAGATGAGATACGCTGTAAGGATAGTCACAGTGCTAAGAACCAT
GAAAGAGGAAATGCAGGCTTTGGGATCACACAGGAGAGGAGGGGCATGTC
TGGGATGCAGTTAAAACTTAAAGCCTGGTAGTAGGCATTGAAAAGGTACA
TCTTCGATTTGTCCCCTCAAAGCTCTGCTTAGGTTCACAATGTGTTCAAG
AGCTGCTGAGTGAAGTTACCTGGTGATGAATGACCCTAGGGCCAGTGGGG
TCTGCAACCCGTGCTTTGAGCTTTCACCTGCCATTCTTGTCACGTTCTGA
CATTGTCATTGTCTGCATTTCTGAAGTTTGGAGCCACAGGGAAGGAATGA
GCTATCTTGCTGAGCTTTTCAAAGGAGTTTTTTCTAAAGGGAGGAGGAGA
TCAAATTGTTAAAGTAGTTTGCTAATTTTACTAGATTCTAGGTGTCTGAA
CTAATTACTGAACTATCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_o19.b1 MSMg01no078_o19.b1 CHROMAT_FILE:
MSMg01no078_o19.b1 PHD_FILE: MSMg01no078_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:24 2005
         (632 letters)



>mm_chr3_83688610_83689641
          Length = 1032

 Score = 1197 bits (619), Expect = 0.0
 Identities = 625/627 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcaaggagcttgtgtcaacccagcctgaagcagatgaccaagtgtgtgaggatgct 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcaaggagcttgtgtcaacccagcctgaagcagatgaccaagtgtgtgaggatgct 265

                                                                       
Query: 66  gaacctgcagccccgagcctgtgctgactgaggatccgaaggactttcccagactctgca 125
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 266 gaacctgcagccccgagcctgtgctgactgaggatccgaaagactttcccagactctgca 325

                                                                       
Query: 126 tttctcacaggaccgatatgaggagaacaacaattgcagaaagagaagcatctgaccaga 185
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 326 tttctcacaggaccgatatgaggagaacaacaattgcagaaagaggagcatctgaccaga 385

                                                                       
Query: 186 agtgttttaacagggtagggctggccatagtttattctccgggcaacagaagacacagca 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 agtgttttaacagggtagggctggccatagtttattctccgggcaacagaagacacagca 445

                                                                       
Query: 246 agtccctgacaggctcatgtaaggccactagctaagctgggtttacatcatagcaaagaa 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 agtccctgacaggctcatgtaaggccactagctaagctgggtttacatcatagcaaagaa 505

                                                                       
Query: 306 ctcatggtcacattgtcactgcaggactgtccccatgtcctcagtactgtcctggtatta 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ctcatggtcacattgtcactgcaggactgtccccatgtcctcagtactgtcctggtatta 565

                                                                       
Query: 366 gcctgagagtctgataggctgagacatgtgtagctggttacagggcagtgttgcttcatc 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gcctgagagtctgataggctgagacatgtgtagctggttacagggcagtgttgcttcatc 625

                                                                       
Query: 426 ctttctaatagattctacagtcagctttccagacacgggtgtggcctaaatgtgggttga 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ctttctaatagattctacagtcagctttccagacacgggtgtggcctaaatgtgggttga 685

                                                                       
Query: 486 gcattagctaaactgaggtttaaatcctcatctgtggtgtctctgacgtgctgtgtgatt 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 gcattagctaaactgaggtttaaatcctcatctgtggtgtctctgacgtgctgtgtgatt 745

                                                                       
Query: 546 tcagggaagttgctcaagatttcaaaacccagtgtgcagcacacatgcctgacagcacct 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 tcagggaagttgctcaagatttcaaaacccagtgtgcagcacacatgcctgacagcacct 805

                                      
Query: 606 accccctcaccaggccccctcttcctc 632
           |||||||||||||||||||||||||||
Sbjct: 806 accccctcaccaggccccctcttcctc 832


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space:   635684
Effective search space used:   635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no078_o19.g1 MSMg01no078_o19.g1 CHROMAT_FILE:
MSMg01no078_o19.g1 PHD_FILE: MSMg01no078_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:24 2005
         (587 letters)



>mm_chr3_83770687_83771673
          Length = 987

 Score = 1112 bits (575), Expect = 0.0
 Identities = 584/587 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtggtaagtctttgggtgttttttggaacaagtttgattattttataatggaaaaatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 agtggtaagtctttgggtgttttttggaacaagtttgattattttataatggaaaaatgg 728

                                                                       
Query: 61  aatactgatgatctctgaatccttttaggccagatgcaattgtttgccttccctgctgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 aatactgatgatctctgaatccttttaggccagatgcaattgtttgccttccctgctgta 668

                                                                       
Query: 121 ctttcaggctggaagttgtactctattgatcgttcctgggtagttgtggacatttaggca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 667 ctttcaggctggaagttgtactctattgatcgttcctgggtagttgtggacgtttaggca 608

                                                                       
Query: 181 gagaagatgagatacgctgtaaggatagtcacagtgctaagaaccatgaaagaggaaatg 240
           ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 607 gagaagatgagatacgctgtaaggagagtcacagtgctaagaaacatgaaagaggaaatg 548

                                                                       
Query: 241 caggctttgggatcacacaggagaggaggggcatgtctgggatgcagttaaaacttaaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 caggctttgggatcacacaggagaggaggggcatgtctgggatgcagttaaaacttaaag 488

                                                                       
Query: 301 cctggtagtaggcattgaaaaggtacatcttcgatttgtcccctcaaagctctgcttagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 cctggtagtaggcattgaaaaggtacatcttcgatttgtcccctcaaagctctgcttagg 428

                                                                       
Query: 361 ttcacaatgtgttcaagagctgctgagtgaagttacctggtgatgaatgaccctagggcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ttcacaatgtgttcaagagctgctgagtgaagttacctggtgatgaatgaccctagggcc 368

                                                                       
Query: 421 agtggggtctgcaacccgtgctttgagctttcacctgccattcttgtcacgttctgacat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 agtggggtctgcaacccgtgctttgagctttcacctgccattcttgtcacgttctgacat 308

                                                                       
Query: 481 tgtcattgtctgcatttctgaagtttggagccacagggaaggaatgagctatcttgctga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tgtcattgtctgcatttctgaagtttggagccacagggaaggaatgagctatcttgctga 248

                                                          
Query: 541 gcttttcaaaggagttttttctaaagggaggaggagatcaaattgtt 587
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gcttttcaaaggagttttttctaaagggaggaggagatcaaattgtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space:   563729
Effective search space used:   563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |