BAC Information

Click to search

BAC

Clone NameMSMg01-079E11
Chromosome3 (Build37)
Map Location 67,887,054 - 67,887,451
singlet/doubletsinglet
Overlap genenone
Upstream geneRsrc1, Mlf1, Gfm1, Lxn, Rarres1, Mfsd1, LOC667207, Gm412, EG208426
Downstream geneEG545531, LOC631379, Schip1, Il12a, LOC639530, 1110032F04Rik, Ift80, Smc4, Trim59, LOC667272, Kpna4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079E11.T7 (MSMg01no079_e11.b1)MSMg01-079E11.TJ (MSMg01no079_e11.g1)
ACCAG300395AG300396
length705709
length of high quality
(start - end)
389 (206 - 594)---
definitionCHROMAT_FILE: MSMg01no079_e11.b1 PHD_FILE: MSMg01no079_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:52 2005CHROMAT_FILE: MSMg01no079_e11.g1 PHD_FILE: MSMg01no079_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTGGTTCCCTTGGACTACTCTTACAAACGTAGGCTCGAATGACAGAAT
CTAGAAAACACTTCGCATATATAGAGGTACGCTGTCTGTAACGCATATAC
TCTGTATATCAATCACTGCATCGTGAGAGAGAGATGAAGCTGTAGACATT
CATGACATTCCAAATGCATTATACATCAGGAGGAGCCTACAGACATGTGG
AACCACTGTTAGAACCATTGTGCTTTATGAAATGACCCATCCAGACAGCT
TAAACAAAGTCTCACTATGTACTACTACACATTTTCATACTGTGTGGTAT
GAAAATGATGTAATGTCAACTTGACAGCTTGAATAGAAGCTACGGAGATT
CGGGAATAACAAACACATTTCTTTCCCTGGGGTCTTGGTGACTAACATAG
AGAATCATCTCTGTTCGTTGACTGTCTCTCTGGAAGGTCTCTAGGCTTTA
GAGGTTACTTTTCAAATTCCCCACGACTCTGTACATCTTGTTGGTTTGTT
TAAAGAGCCGCCTGTGTGACAAAATAGCATCTGCGTCTGTTGTAATTCAC
ACAAAGCAGTAGCTGCACATTCCTGTTCATGGTCATGATGGCAAAGCCAG
TCTCTGCTGAAGCTCAGACTTGGGGGTAAGCAACACTGGGGTAGCTGGAA
CACAG
GATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTAGCTTGGGTACCTCAAACTTGAGTCTCTTA
GAATAGAGGTCTGACTCTATGAATTCTCCCCGTGTCACACAGTCATGACT
GCATATACTTCTTAGCTGCTCATAGCCATCACGAAGTCCCAAACTGACGA
TAACTGTCTAGACACACCGTCACCATTGCTTTTGCGGGCTTTTGGCCTTG
TTTAACCTTAAAGGCTCATGATGTGCATTTCACTCAGGGACCAGCACTAT
GACTGAATAGAAGTTTGTGTTCCCGGACCGTATCTGAACATGTTCCTGCT
CATTCGCGACACCTCGATCATTCTGCTCCTATGAGAGACTTCCTTAGACT
GCCTCCGACTCACCCGATTTGAGCTGCACAGTTTCACCTGCTTATCGTCA
AGGAAAAGACGTGGCACTATCGGTAAAGTCATGGAGCGGGATTATCTAGA
TAGGCTACTATGTAGATAGTTAGACTCTATCTGGCTCGTATCATTTTCTC
ACTGCCTATCTCCACGTGCCTTTCTTATTCCAACTGACTATCATGATTAA
GAAGAAGCACTGTTCTGCCTAGGCATAATCACCATCTGGGTCACCGAATG
CCCCTGTTGTACCCACAAACTAAAGGACATGGTGAAAGTCTTTCTGTCTC
TTATAAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_e11.b1 MSMg01no079_e11.b1 CHROMAT_FILE:
MSMg01no079_e11.b1 PHD_FILE: MSMg01no079_e11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:52 2005
         (389 letters)



>mm_chr3_67886888_67887676
          Length = 789

 Score =  685 bits (354), Expect = 0.0
 Identities = 383/398 (96%), Gaps = 9/398 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattccaaatgcattatacatcaggaggagcctacagacatgtggaaccactgttagaac 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 564 cattccaaatgcattatacatcaggaggggcctacagacatgtggaaccactgttagaac 505

                                                                       
Query: 61  cattgtgctttatgaaatgacccatccagacagcttaaacaaagtctcactatgtactac 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cattgtgctatatgaaatgacccatccagacagcttaaacaaagtctcactatgtactac 445

                                                                       
Query: 121 tacacattttcatactgtgtggtatgaaaatgatgtaatgtcaacttgacagcttgaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tacacattttcatactgtgtggtatgaaaatgatgtaatgtcaacttgacagcttgaata 385

                                                                       
Query: 181 gaagctacggagattcgggaataacaaacacatttctttccctggggtcttggtgactaa 240
           |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 384 gaagctacagagattcgggaataagaaacacatttctttccctggggtcttggtgactaa 325

                                                                       
Query: 241 catagagaatcatctctgttcgttgactgtctctctggaaggtctctaggctttagaggt 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 catagagaatcgtctctgttcgttgactgtctctctggaaggtctctaggctttagaggt 265

                                                                       
Query: 301 tacttttcaaattccccacgactctgtacatcttgttggtttgtttaaagagccgcctgt 360
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 264 tacttttcaaattccccacgactctgtacatcttgttggtatgtttaaagagccgcctgt 205

                                                 
Query: 361 gtga---------caaaatagcatctgcgtctgttgta 389
           ||||         |||||||||||||||||||||||||
Sbjct: 204 gtgagccacttgacaaaatagcatctgcgtctgttgta 167


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space:   296400
Effective search space used:   296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)