Query= MSMg01no079_e19.b1 MSMg01no079_e19.b1 CHROMAT_FILE:
MSMg01no079_e19.b1 PHD_FILE: MSMg01no079_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:53 2005
(438 letters)
>mm_chr3_53835169_53836006
Length = 838
Score = 692 bits (358), Expect = 0.0
Identities = 419/448 (93%), Gaps = 16/448 (3%)
Strand = Plus / Plus
Query: 7 gaattctcaattcccttttcctgctaatcctttctttaaatagctctaaatttgcatgag 66
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 gaattctcaattcctttttcctgctaatcctttctttaaatagctctaaatttgcatgag 250
Query: 67 ttgggatgtattcaaaaagtgactgaatacaaaataatccctttaaatttttttttgttt 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ttgggatgtattcaaaaagtgactgaatacaaaataatccctttaaatttttttttgttt 310
Query: 127 ttattattcattgtttgcatatgtaagggcatgcgcgcgtgc--gc------gcgcacac 178
||||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct: 311 ttattattcattgtttgcatatgtaagggcatgcgcgcgcgcacgcacgcacgcgcacac 370
Query: 179 acacacacacacacacacacacacacaca--------ggaacgacggaaggtcagaggac 230
||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 371 acacacacacacacacacacacacacacacacacacaggaacgacggaaggtcagaggac 430
Query: 231 aacgtgaggtagctggttctctctgtgagtccaggagatggaatttatttaacaagtctt 290
||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 431 aacgtgagggagctggttctctctgtgagtccaggagatggaacttaggtaacaagtctt 490
Query: 291 gggtgcgagttttgttgcctgctgagccatcttgtctaccttcatattactttaataact 350
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 491 gggtgtgagttttgttgcctgctgagccatcttgtctaccttcatattactttaataatt 550
Query: 351 gtcaaaacaattaataaccccccatgaaggaaatgccttaatctttgctttcatttcaca 410
|||||||||||||| || |||||||||||||||||||||||||||||||||||| |||
Sbjct: 551 gtcaaaacaattaacaagttcccatgaaggaaatgccttaatctttgctttcatttaaca 610
Query: 411 gtacacgtttaagctagacattttctat 438
||||||||||||||||||||||||||||
Sbjct: 611 gtacacgtttaagctagacattttctat 638
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space: 355641
Effective search space used: 355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no079_e19.g1 MSMg01no079_e19.g1 CHROMAT_FILE:
MSMg01no079_e19.g1 PHD_FILE: MSMg01no079_e19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:53 2005
(290 letters)
>mm_chr3_54017051_54017740
Length = 690
Score = 538 bits (278), Expect = e-157
Identities = 287/290 (98%)
Strand = Plus / Minus
Query: 1 catttccttgtctccttaaaggttcttacagagctccgtggacctcccaaggaagtgatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 catttccttgtctccttaaaggttcttacagagctccgtggacctcccaaggaagtgatg 431
Query: 61 cacccgagattaatgacatatccatgtccattgtcagctttgcaaatgattttaattatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 cacccgagattaatgacatatccatgtccattgtcagctttgcaaatgattttaattatt 371
Query: 121 catcgttaatatatttgctttaagttacattaagcatggattgatagaagcctatgtaaa 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 370 catcgttaatatatttgctttaagttacattaagcatggattgatggaagcctatgtaaa 311
Query: 181 gtcctgcttcaaatgaaataccctgacaaatagaaatgccattgattttggggagttcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gtcctgcttcaaatgaaataccctgacaaatagaaatgccattgattttggggagttcag 251
Query: 241 gggtctcatgggaaatacaacaccatgcgaactttgatggcagagtttag 290
||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ggggcacatgggaaatacaacaccatgcgaactttgatggcagagtttag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
