Query= MSMg01no079_f24.b1 MSMg01no079_f24.b1 CHROMAT_FILE:
MSMg01no079_f24.b1 PHD_FILE: MSMg01no079_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:59 2005
(598 letters)
>mm_chr3_65848505_65849502
Length = 998
Score = 1058 bits (547), Expect = 0.0
Identities = 583/595 (97%)
Strand = Plus / Minus
Query: 4 gaattccactgtgactatgcctcactgtgtctatgcatcatcattatccgttcatcagtt 63
||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||
Sbjct: 842 gaattccactgtgactacgcatcactgtgtctatgcatcgtcattatccgttcatcagtt 783
Query: 64 aagacatttagttccctccatttcctagccattgtgaacagagtttcaagtcctttggtc 123
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 aagacatttagtttcctccatttcctagccattgtgaacagagtttcaagtcctttggtc 723
Query: 124 atttaccagggaatgatatatctgcattataagttgatctagtcttaggtttgttaagaa 183
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 722 atttaccagggaatgatatatctgcattataagttggtctagtcttaggtttgttaagaa 663
Query: 184 gtctccacactgatttacatagtggctacattcaccagcaatgaagaaagatcccatgtc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 gtctccacactgatttacatagtggctacattcaccagcaatgaagaaagatcccatgtc 603
Query: 244 ctgcatctcaccatcccatgtccccacatttcaccatcaatgtccccacatcttaccatt 303
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 602 ctgcatctcaccatcccatgtccccacatttcaccatcaatatccccacatcttaccatt 543
Query: 304 aatgtcctgacatctcatcatcaatgtcaccacatctcaccacccatgtcccacatctca 363
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 542 aatgtcccgacatctcatcatcaatgtcaacacatctcaccacccatgtcccacatctca 483
Query: 364 ccatccatgtccccacagtttaccagcattttttcaggtgagatgaaatctcaaagtgtt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ccatccatgtccccacagtttaccagcattttttcaggtgagatgaaatctcaaagtgtt 423
Query: 424 ttcatttgagttctcctaattgctaaaaatatcaaacattcttatgatgtttgtcatttt 483
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 422 ttcatttgagttctcctaattgctaaagatatcaaacattcttatgatgtttgtcatttt 363
Query: 484 tatttctgcttttgagaataccctattcaactcactagcctagtttcaattgggctgctt 543
|||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||
Sbjct: 362 tatttctgcttttgagaataccctattcaactcattagcccagttttaattgggctgctt 303
Query: 544 gttttcttgattctctgttttttgtatactctggatattaatcctctatcagatg 598
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gttttcttgattctctgttttttgtatactctggatattaatcctctatcagatg 248
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space: 580944
Effective search space used: 580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no079_f24.g1 MSMg01no079_f24.g1 CHROMAT_FILE:
MSMg01no079_f24.g1 PHD_FILE: MSMg01no079_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:59 2005
(446 letters)
>mm_chr3_65719610_65720454
Length = 845
Score = 659 bits (341), Expect = 0.0
Identities = 406/451 (90%), Gaps = 39/451 (8%)
Strand = Plus / Plus
Query: 1 tctggaactggagttacagttggttgcaagcctccatgtaggtgctgggaacacacacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 tctggaactggagttacagttggttgcaagcctccatgtaggtgctgggaacacacacac 284
Query: 61 agacacacacacacacacacacacacacacacacacacacacacacacacacacactgtc 120
|| ||||||||| ||||||||||||||||||
Sbjct: 285 ag------------------------------acacacacagacacacacacacactgtc 314
Query: 121 ctctggaagaacatcaaaggctcttaaccactaaaccatctctccagcctgatttttaaa 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 315 ctctggaagaacatcaaaggct-ttaaccactaaaccatctctccagcctgatttttaaa 373
Query: 181 gaaagttcatgagacagttgacatccaaagacaaaacaaacaaaaactcttatat----- 235
||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 374 gaaagttcatgagacagttgacatctaaagacaaaacaaacaaaaactctcatatgggta 433
Query: 236 --gttgaccttggtgtctcatttttaaaacaagtctctgggaggtgaagtgagttggaat 293
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 434 aggttgaccttggtatctcattttt-aaacaagtctctgggaggtgaagtgagttggaat 492
Query: 294 caaatgtcacatgtcctcatcacaccaaggcacaacatccctgtcttctcccaattgagg 353
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 493 caaatgtcacatgtccccatcacaccaaggcacaacatccctgtcttctcccgattgagg 552
Query: 354 ggagggacacaatactgggggcaaagcagggctgtgctctataccaagctatggatcccc 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ggagggacacaatactgggggcaaagcagggctgtgctctataccaagctatggatcccc 612
Query: 414 aggcaaagtgtcaggccacaagactgtctga 444
|||||||||||||||||||||||||||||||
Sbjct: 613 aggcaaagtgtcaggccacaagactgtctga 643
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 845
Length adjustment: 10
Effective length of query: 436
Effective length of database: 835
Effective search space: 364060
Effective search space used: 364060
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
