Query= MSMg01no079_g21.b1 MSMg01no079_g21.b1 CHROMAT_FILE:
MSMg01no079_g21.b1 PHD_FILE: MSMg01no079_g21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:03 2005
(505 letters)
>mm_chr3_110244933_110245840
Length = 908
Score = 851 bits (440), Expect = 0.0
Identities = 488/504 (96%), Gaps = 5/504 (0%)
Strand = Plus / Plus
Query: 5 ggaattc-taaatatgc-caatacttgaggctttttgcattcttcttcatttttaaataa 62
||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattcataaatatgcaaaatacttgaggctttttgcattcttcttcatttttaaataa 264
Query: 63 gttactgtctgctattgttagtgtccaatttcactaagattgcatcagtattaaatgtat 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gttactgtctgctattgttagtgtccaatttcactaagattgcatcagtattaaatgtat 324
Query: 123 ttgaaattatcttatgattaccctataatcatcgagaagaaaatagaaaaa-tttgacat 181
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 325 ttgaaattatcttatgattaccctataatcattgagaagaaaatagaaaaattttgacat 384
Query: 182 cggcttaggcagagatttcttagcttccaaactaaagatacaatatataaatgaaaaaga 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 385 cggcttaggcagagatttcttagcttccaaactaaagatacaatatataaatgaaaagga 444
Query: 242 ttaataagttaattttcattgaaatagacttttattctatgcctggcattattaaaagta 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttaataagttaattttcattgaaatagacttttattctatgcctggcattattaaaagta 504
Query: 302 ctacagtaaactgacctgaaattatttcagtttcataaggagagagccttggtgtgcaaa 361
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 505 ctacaataaactgacctgaaattatttcagttttataaggagagagccttggtgtgcaaa 564
Query: 362 ctatgttacaaactttcatagcaatcaacacaagt-tttcaaataagcaaatagtttgaa 420
|||||||| ||||||||||||||| ||| |||||| ||| |||||||||||| |||||||
Sbjct: 565 ctatgttaaaaactttcatagcaaacaaaacaagtgttt-aaataagcaaatggtttgaa 623
Query: 421 cagaaaccaaaccaaattataaacagagaaaacccggcctgatcagggtcacaagtctct 480
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 624 cagaaaccaaaccaaattataaacagagaaaacctggcctgatcagggtcacaagtctct 683
Query: 481 tcctttccaccccagcacaggggt 504
|| |||||||||||||||||||||
Sbjct: 684 tcttttccaccccagcacaggggt 707
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 908
Length adjustment: 10
Effective length of query: 495
Effective length of database: 898
Effective search space: 444510
Effective search space used: 444510
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no079_g21.g1 MSMg01no079_g21.g1 CHROMAT_FILE:
MSMg01no079_g21.g1 PHD_FILE: MSMg01no079_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:03 2005
(602 letters)
>mm_chr3_110381186_110382188
Length = 1003
Score = 1081 bits (559), Expect = 0.0
Identities = 592/603 (98%), Gaps = 1/603 (0%)
Strand = Plus / Minus
Query: 1 aaatcaaacagaagaa-aaagttaacatggtgtgtatttatcagtagaccacagtggagt 59
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 aaatcaaacagaagaataaagttaacatggtgtgtatttatcagtagaccacagtggagt 744
Query: 60 taaagaggggaagtagaaaatatctgagttaatccagggaaactcacattacagtcctct 119
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 743 taaagaggggaagtagaaaatatctgagttaatccacggaaactcacattacagtcctct 684
Query: 120 tgcattaaattaaaatgtgatgttcataaaggctagcatggataatgctttaaaggcact 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tgcattaaattaaaatgtgatgttcataaaggctagcatggataatgctttaaaggcact 624
Query: 180 ttccatgttaaaattatgttattctcaatatatggtcttgataagtaaaaagggatcatg 239
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ttccatggtaaaattatgctattctcaatatatggtcttgataagtaaaaagggatcatg 564
Query: 240 cattgttcaccttttgagcagttctatggctatttctattccacattttcccagaggtca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 cattgttcaccttttgagcagttctatggctatttctattccacattttcccagaggtca 504
Query: 300 aaagcaaagtctaaattaggacacctcccaaagacaaacagcacgccgtatgttcaatat 359
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 503 aaagcaaagtctaaattaggacacctcccaaagacaaacagcatggggtatgttcaatat 444
Query: 360 cagcttattcaggacacaccaaaggcatgctctaaaatatatcctatgactaagccttga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cagcttattcaggacacaccaaaggcatgctctaaaatatatcctatgactaagccttga 384
Query: 420 gtagagactttaaaactgtcctgtatttacagatctctttctttaatattttgtagaagc 479
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 383 gtagagactttaaaactgtcctctatttacagatctctttatttaatattttgtagaagc 324
Query: 480 cgaaaactgtggagcagagagaatcgtctttcttttaattcaaaacaatgatgccatgac 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgaaaactgtggagcagagagaatcgtctttcttttaattcaaaacaatgatgccatgac 264
Query: 540 aaccagttgaaatgtgaaagattgtcagatcaacaattgttttttggctccatgacaaca 599
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aaccagttgaaatgtgaaggattgtcagatcaacaattgttttttggctccatgacaaca 204
Query: 600 aat 602
|||
Sbjct: 203 aat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1003
Length adjustment: 10
Effective length of query: 592
Effective length of database: 993
Effective search space: 587856
Effective search space used: 587856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
