Query= MSMg01no079_l16.b1 MSMg01no079_l16.b1 CHROMAT_FILE:
MSMg01no079_l16.b1 PHD_FILE: MSMg01no079_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:26 2005
(567 letters)
>mm_chr3_127198541_127199507
Length = 967
Score = 940 bits (486), Expect = 0.0
Identities = 521/538 (96%), Gaps = 10/538 (1%)
Strand = Plus / Minus
Query: 5 gaattccagaatagccagcaaggttttctacacaaagaaaacctgtctccaaacaaaac- 63
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaattccagaatagccagaaaggttttctacacaaagaaaacctgtctccaaacaaaaca 479
Query: 64 ------aaaaaaagaaaggaagagagaaagaaaatgtgctatgttgaaattcacttgctt 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 aaaaaaaaaaaaagaaaggaagagagaaagaaaatgtgctatgttgaaattcacttgctt 419
Query: 118 gatatatatccattcatcaacttttctcctttttttaagttagagaaattcttatgttgt 177
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 gatatatattcattcatcaacttttctcctttttttaagttagagaaattcttatgttgt 359
Query: 178 attttggtcgtatttcccagactccactccattctctctggttctgttgaagatagcgtt 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 attttggtcgtatttcccagactccactccattctctctggttctgttgaagatagcgtt 299
Query: 238 tcccagagcccaggtggcctccgacttggtttattgagacagggtttctctgtgtagctc 297
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 298 tcccagagcccaggtggcctccgacttggtttatcgagacagggtttctctgtgtagctc 239
Query: 298 tggctgtcctggaactcactccatagaccagactggcctcacactaagagatctgcctgc 357
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tggctgtcctggaactcactctatagaccagactggcctcacactaagagatctgcctgc 179
Query: 358 ctctgcttcccaagtgataaaagtaaaggcctaacccaaagtatcatttcttaaccct-- 415
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 ctctgcctcccaagtgataaaagtaaaggcctaacccaaagtatcatttcttaacccttt 119
Query: 416 -tttatgaggttagaaaatgaatgaaaaataaacacagggctcataatgtgtatgttcct 474
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 ctttatgaggttagaaaatgaatgaaaaataaacacagggctcataatgtgtatgttcct 59
Query: 475 tgtcccaagtctttagggggctcaagcataaagatcacaagtccaaagccagcctaga 532
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 58 tgtcccaagtctttagggggctcaagcagaaagatcacaagtccaaggccagcctaga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space: 533049
Effective search space used: 533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no079_l16.g1 MSMg01no079_l16.g1 CHROMAT_FILE:
MSMg01no079_l16.g1 PHD_FILE: MSMg01no079_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:26 2005
(598 letters)
>mm_chr3_127103365_127104362
Length = 998
Score = 969 bits (501), Expect = 0.0
Identities = 536/553 (96%), Gaps = 10/553 (1%)
Strand = Plus / Plus
Query: 52 ctttgacctcttctagctcaacagtggctagcatacacccacacttacac------acac 105
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 250 ctttgacctcttctagctcaacagtggctggcatacacccacacttacacgcacacacac 309
Query: 106 acacacaccaataaataaataaataaataaataaataaataaataaataaataaataaaa 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 310 acacacaccaataaataaataaataaataaataaataaataaataaataaataaa----a 365
Query: 166 cacatacatatagaaacttcttgaaaaatcaaaaacaaagacaagtgatagttctgtata 225
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 366 cacacacatatagaaacttcttgaaaaatcaaaaacaaagataagtgatagttctgtata 425
Query: 226 tgtgtagaagtgggacacagcagcacggccctgagaacagccattatctgaggaagaaac 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tgtgtagaagtgggacacagcagcacggccctgagaacagccattatctgaggaagaaac 485
Query: 286 aaaacttaataatcttgcatttgagacactcagttgtgtgttttaaagcataaattattc 345
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 486 aaaacttaataatcttgcatttgagacactcagttgcgtgttttaaagcataaattattc 545
Query: 346 ataaaaggggaggaatccagccacttgggagcaccaggcaccatcagaactgatcattaa 405
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 546 ataaaaggcgaggaatccagccacttgggtgcaccaggcaccatcagaactgatcattaa 605
Query: 406 ctaattgagcagcagtaattgatcaccagtcacttcttataccaagaccctttggtgtct 465
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 606 ctaattgagcagcagtaattgatcaccagtcacttcttataccaagcccctttggtgtct 665
Query: 466 tgttctacttacattacaaattgccctggcatcgataaagcagaaacccccagccatctg 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tgttctacttacattacaaattgccctggcatcgataaagcagaaacccccagccatctg 725
Query: 526 gcctggcctgtattccggcgtgccaggttttcaaaggaccagggtctaaagactgacatt 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 gcctggcctgtattccggcgtgccaggttttcaaaggaccagggtctaaagactgacatt 785
Query: 586 tggggttcctgtg 598
|||||||||||||
Sbjct: 786 tggggttcctgtg 798
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space: 580944
Effective search space used: 580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
