BAC Information

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BAC

Clone NameMSMg01-079O12
Chromosome3 (Build37)
Map Location 88,669,504 - 88,669,826
singlet/doubletsinglet
Overlap gene5830417I10Rik
Upstream genePrcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11
Downstream geneMsto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079O12.T7 (MSMg01no079_o12.b1)MSMg01-079O12.TJ (MSMg01no079_o12.g1)
ACCAG300876AG300877
length749711
length of high quality
(start - end)		248 (43 - 290)521 (68 - 588)
definitionCHROMAT_FILE: MSMg01no079_o12.b1 PHD_FILE: MSMg01no079_o12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:39 2005CHROMAT_FILE: MSMg01no079_o12.g1 PHD_FILE: MSMg01no079_o12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAGGACACCCAGGGCTATACAGAGAAACTCTATCTCAAAAAACCAAAA
TAAATAAATAAATAAATTATATATATATAATGCTGTCCTAGCTCTTCAGA
AGCTCAGGCAGGACTACTGCTGGATACCAGGTGCTCACACAATCTACCAA
GATAGAGAGGGAAGGAAAGGAAGTGGAAGAAGGCTAGGGAGAAGGAGGGA
GAAGGGAGGGGCAGAGGAAGGGGAAGGGGAGAAGAGAGTCCCACCCTCCC
CTCTTCTACCCCTTTTTTATTCCCCCACCCACCCCCCTCCTTTTTTCATT
CTATTACTTCTCTTCTTTATTGTTCTAATTATTTTCTTTCCCCCTTCGTT
TATCTTTACCCCCCCCCTTTGCCTCTTTGTTTCCGCCTCCCCGCCCCGTC
CCGCTTCTCGGCTCTCATCTGCTATTCTGTCCCATGCTTGCCTTCTTTCT
TGCTCTCTCTTTCCATCCTTCGCCCCGCTCGCCCTATTTTTCGCCCATCA
TCCCGCCCCCTCTCACCTCGCTGATGTTACTCTCGGCAGCCGTCATTTTT
GTGTAGCCTTTTTGCCATATCGCTTCACTCACTTTCTATTCTCTTTGTGT
CCTCTTTGTTCTACTTCCTGGCCTGCGGCCTGTGTGCCCCCCTCCAGTAT
CTGCTCCCCCCGTCTGCTTCCCTCACTTCGCCCCCCCCTCATATTATCT

AAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACCTGTCTCAACCTCCAGATTGCTAGAACTGAA
CATGTGTGCTGTCCTGGTAGAAAAACATTCTTGTTTGAGATAACTATTGC
TTAAATTAAATACACAGAGACTACCTGGAAAGAAATTAATAGCTAGACAT
GGTGATACACACCATTAATCCCAGAACTTGGGAGGCAGACTCAGGCAGCT
CTCTGTGAGTTCAAAGCCAGCTTAGTCTACAGAACAAGGGGTCCAAGAGA
GCTCAGTGGATAATGCTTATATGCCATGGATGAAACCCAGAGTTCAATTT
TCAACACTGCTTAAAACCAGATGTGGTGGTTTTAAGCCTCTAATATCTAA
TATCTTTTGAATAAATAAATAAATATTTATTTATTCAAAATAAATTCCAA
AATTGAAAAAATGATTAAAAAGCAAAAAGCCTGCGCTGGCAGGACAGCTC
AGCAGGTAAGAACATTGACTACTCTTCCAAAGGTCCTAAGTTCAAATCCC
AGCAACCACATGGTGGCTCACAACCACCAGAAATGAGATCTGATGCCCTC
TTCTGGTGTGTCTGAAGTCAGCTACCCTGTACTTACATATGATAATAATA
AATAATTCTTTTTTAAAAAGCCTGTTTTGGTGGTGCACACCTTTAACCCA
GAGCCTGGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_o12.g1 MSMg01no079_o12.g1 CHROMAT_FILE:
MSMg01no079_o12.g1 PHD_FILE: MSMg01no079_o12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:39 2005
         (521 letters)



>mm_chr3_88669504_88670424
          Length = 921

 Score =  609 bits (315), Expect = e-178
 Identities = 321/323 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctgtctcaacctccagattgctagaactgaacatgtgtgctgtcctggtagaaaaaca 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 acctgtctcaacctccagaatgctagaactgaacatgtgtgctgtcctggtagaaaaaca 264

                                                                       
Query: 61  ttcttgtttgagataactattgcttaaattaaatacacagagactacctggaaagaaatt 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttcttatttgagataactattgcttaaattaaatacacagagactacctggaaagaaatt 204

                                                                       
Query: 121 aatagctagacatggtgatacacaccattaatcccagaacttgggaggcagactcaggca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 aatagctagacatggtgatacacaccattaatcccagaacttgggaggcagactcaggca 144

                                                                       
Query: 181 gctctctgtgagttcaaagccagcttagtctacagaacaaggggtccaagagagctcagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 gctctctgtgagttcaaagccagcttagtctacagaacaaggggtccaagagagctcagt 84

                                                                       
Query: 241 ggataatgcttatatgccatggatgaaacccagagttcaattttcaacactgcttaaaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83  ggataatgcttatatgccatggatgaaacccagagttcaattttcaacactgcttaaaac 24

                                  
Query: 301 cagatgtggtggttttaagcctc 323
           |||||||||||||||||||||||
Sbjct: 23  cagatgtggtggttttaagcctc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space:   465521
Effective search space used:   465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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