BAC Information

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BAC

Clone NameMSMg01-080B21
Chromosome3 (Build37)
Map Location 18,379,439 - 18,379,942
singlet/doubletsinglet
Overlap genenone
Upstream geneENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5, Cyp7b1
Downstream geneLOC622921, LOC100040153, Armc1, Mtfr1, Pde7a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080B21.T7 (MSMg01no080_b21.b1)MSMg01-080B21.TJ (MSMg01no080_b21.g1)
ACCAG301036AG301037
length710705
length of high quality
(start - end)		584 (40 - 623)547 (66 - 612)
definitionCHROMAT_FILE: MSMg01no080_b21.b1 PHD_FILE: MSMg01no080_b21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:55 2005CHROMAT_FILE: MSMg01no080_b21.g1 PHD_FILE: MSMg01no080_b21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
ACATTTTTACATTGCAATAGCATGAAAACAGGAGATATGTACGCCATATG
TAGTCACAGGTCGGGTGAGTCAGTATTTACATCTTTGTTTTATTGTTTTG
TTAGTTTGTGAACCTTTACGTGACTCATCTCTGGATCTTTAGAAACTTTC
TATCTAGTCTTTGAGAACTCTTGTTGTTAGCATTCCATTGCTGAGAAATA
GTTTGTGGGAAAACAACTTGAAGGAGAACATGTTTATTTTGGCTTATGTC
ACAAGTGTCAGACCACAGTAGTTTCGCACCACAGTACTGAACTGCACAGC
ATGACTTCATTCCTGAGAACTGAACATTGTGCTCATTTTCTGTCCTTGTG
CTTCCTCCTCCCTCCATACCTCCCTGTACACTTCTTGGCCACTTTTCTTT
TATGCTGAATTCAAATTCTTAGATTATCTCTTATCACAATGAACTTCCCT
CTTACTCCTGTGGCATTTTGGGTTTTGTCTAAAATGTTCCTCTAAAGCTG
TTTGCTAAAGGTATTCAAAAGTAAACAGATTATGAGGGCTCTGACTTCAT
CAATGAATGAATTGACTATTAGACAAAAGCTTGGCAGGTGGCACTAACTG
ATGGATGAGCCCTTAGAATCTACATACTCCTCTAACCCTACACTTGCCTA
GCTTGCTGCT

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCTATTCAGCTCTGTACCCCAATTTTAATAGGGTT
ATTTTGTTTTCTGGAGTCTAACTTCTAGAGTTCTTTGTATATAAGTGTAT
CTTAGCCCTCAATCTGATGAAGAATTGGTAAATATCTTTTCCCAATTTGT
TCATTGCCATTTTGTCCTATTGACAGTGTCTTTTGCCTTACAATTTGCTT
TGCAATTTTATGTGGTCTCATTTGTTGATTGTTGGTTATTGATCTTAGAG
CATAAGCTATTGGTGTTCTGTTCAAGAAATTTTTCCCCTGTGCCCCTGTG
TTGCAGGATCTTCCTGACTTTCTCTTCTATTAGTTTCACTGTATCTGATT
TTATGTGGAGGTCCTTGATCTACTTGGAATTGAGCTTTGTATAAGGAGAT
TAGAATGGATCAATTTGCATTCTTCTAAGTGCTGAACACCAGTTGAACCA
GCAACATTTGCTGAAAATGGTGTCTTTTTTTCCATTGAATTGTTTTAGCT
CCTTTGACAACGATCAAGTACCATAGATGTATGGGTTTATTTCTGGGTCT
TCAATTCTGTTCCACTGATTTACCTGCCTGTCTTTGTATGAATACTATGC
AATTTTTGTCAAATTGCTCTGTATAACATCTTGAGGACAGGAATACTGAT
TCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_b21.b1 MSMg01no080_b21.b1 CHROMAT_FILE:
MSMg01no080_b21.b1 PHD_FILE: MSMg01no080_b21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:55 2005
         (584 letters)



>mm_chr3_18378959_18379942
          Length = 984

 Score =  959 bits (496), Expect = 0.0
 Identities = 502/504 (99%)
 Strand = Plus / Minus

                                                                       
Query: 81  tcagtatttacatctttgttttattgttttgttagtttgtgaacctttacgtgactcatc 140
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 984 tcagtatttacatctttgttttattgttttgtaagtttgtgaacctttacgtgactcatc 925

                                                                       
Query: 141 tctggatctttagaaactttctatctagtctttgagaactcttgttgttagcattccatt 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 tctggatctttagaaactttctatctagtctttgagaactcttgttgttagcattccatt 865

                                                                       
Query: 201 gctgagaaatagtttgtgggaaaacaacttgaaggagaacatgtttattttggcttatgt 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 gctgagaaatagtttgtgggaaaacaacttgaaggagaacatgtttattttggcttatgt 805

                                                                       
Query: 261 cacaagtgtcagaccacagtagtttcgcaccacagtactgaactgcacagcatgacttca 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 cacaagtgtcagaccacagtagtttcgcaccacagtactgaactgcacagcatgacttca 745

                                                                       
Query: 321 ttcctgagaactgaacattgtgctcattttctgtccttgtgcttcctcctccctccatac 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttcctgagaactgaacattgtgctcattttctgtccttgtgcttcctcctccctccatac 685

                                                                       
Query: 381 ctccctgtacacttcttggccacttttcttttatgctgaattcaaattcttagattatct 440
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ctccctgaacacttcttggccacttttcttttatgctgaattcaaattcttagattatct 625

                                                                       
Query: 441 cttatcacaatgaacttccctcttactcctgtggcattttgggttttgtctaaaatgttc 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cttatcacaatgaacttccctcttactcctgtggcattttgggttttgtctaaaatgttc 565

                                                                       
Query: 501 ctctaaagctgtttgctaaaggtattcaaaagtaaacagattatgagggctctgacttca 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctctaaagctgtttgctaaaggtattcaaaagtaaacagattatgagggctctgacttca 505

                                   
Query: 561 tcaatgaatgaattgactattaga 584
           ||||||||||||||||||||||||
Sbjct: 504 tcaatgaatgaattgactattaga 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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