BAC Information

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BAC

Clone NameMSMg01-080E09
Chromosome3 (Build37)
Map Location 64,869,790 - 64,870,133
singlet/doubletsinglet
Overlap genenone
Upstream geneEG56544, 4930518C23Rik, LOC380739, EG637004, EG667031, EG637053, LOC672951, EG639869, EG667060, EG667069, LOC100040918, 4933425M15Rik, LOC670110
Downstream geneKcnab1, Ssr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp, LOC545530, LOC100040978, EG624866, Ccnl1, LOC625048, Veph1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080E09.T7 (MSMg01no080_e09.b1)MSMg01-080E09.TJ (MSMg01no080_e09.g1)
ACCAG301156AG301157
length687687
length of high quality
(start - end)
349 (46 - 394)230 (73 - 302)
definitionCHROMAT_FILE: MSMg01no080_e09.b1 PHD_FILE: MSMg01no080_e09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:07 2005CHROMAT_FILE: MSMg01no080_e09.g1 PHD_FILE: MSMg01no080_e09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTAACTACTCGCAACGACTGGAGTAGGATCCGGCCAAAGCTGAG
GTGAAATAGATTATATCACAGCAGTGTGCAGACTGTGATCTGTACAGCCA
GGGATGATCAGGTAGCATGGAAACAAGATTGTTTTAGCTCATTGTGATGG
TTTGTATATTCTTGGACCAGGGAGTGGCACCATTTGGAGGTGTGGCCTTG
TTGGAATAAGTGTGACCTGGTTGGAGTAGGTGTGTCACTATGGGTGTGGA
CATAAGATCTTCAACCTAGTTGCCTGGAAGTTAGTCTTCCACTAGCAGCC
TTCAGATGAAGACATAGAACTCTCAGCTCCTCCTGCACCATGCCTGCCTG
GATACTGCCATGCTCCCACCTTGATGATAATGAACTGAACCTCTGAACCT
GTAAGCTATCCCCAATTAAATGTTGTTTTATAACATTTGCCTTGGTCATG
GTGTCTGTTCACAGCAGTATACCCCTAATTAAGACACTCATGATGCGATC
TATCCCTTTATTTGCATTAGCATAAGATAATTTATTTTCATACACAACAG
TACAGCTATCATCACTGTCTCTGGAATGTCTTACTTTTTTTTTTCAAATT
GTCGATTCTACGCGAGGTTGACGCACAGCACCAATCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGATCTGTACCCCATTTTTAA
TAGGGTTATTTGTTTCTCTGGAGTCTAACTTCTTGAGTTCTTTGTATATA
TTAGATATTAGCCCTCTATTGGATGTAGGGTTGGTAAAGATCTTTTCCCA
CTCTGTTGGTTGCCTTTTTGTCTTATAGTGCCCTTTGCCTTACAGAAGCT
TTGCAATTTTATGAGGTCCCATTTGTCACTTGATCTTTGACAAAGAAGCT
AATTCCACCCAGCGGTATTTATACTGCCTTTTCAACAAATGGCGCTGGTT
CATCTGGCTGTTAGCATGTAGAAAAATGCAAATTGATCCATTCTTATCTC
CCTGTACTATGCCCACGTCCATGTGTATTAAGATCCTCTACATATCATCC
GACACACTGATACTAATATCAAAGCTTTTGTTGAACACTCTCTAGCACAT
GTACACTCGGCCAGCATTTCTTGATCACGAACCCATCGGCTTATGTCCCA
CCATTAACAACCCATTTCCTTTTCCTTCTTTGGCTTTTGCTCCCCCGAAC
CTGCATTTCCTATCCTCCGCCTATTTCACTTTGATCATATCTCGCTCGCA
TGAATGTTATAACATTTCATTTCCGCCAACACTCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_e09.b1 MSMg01no080_e09.b1 CHROMAT_FILE:
MSMg01no080_e09.b1 PHD_FILE: MSMg01no080_e09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:07 2005
         (349 letters)



>mm_chr3_64869586_64870333
          Length = 748

 Score =  644 bits (333), Expect = 0.0
 Identities = 342/345 (99%), Gaps = 1/345 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctaactactcgcaacgactggagtaggatccggccaaagctgaggtgaaatag 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctaactact-gcaacgactggagtaggatccggccaaagctgaggtgaaatag 263

                                                                       
Query: 65  attatatcacagcagtgtgcagactgtgatctgtacagccagggatgatcaggtagcatg 124
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 264 attatatcacagcagtgtgcagactgtgctctgtacagccagggatgatcaggtagcatg 323

                                                                       
Query: 125 gaaacaagattgttttagctcattgtgatggtttgtatattcttggaccagggagtggca 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 324 gaaacaagattgttttagctcattgtgatggtttgtatattcttggaccaggaagtggca 383

                                                                       
Query: 185 ccatttggaggtgtggccttgttggaataagtgtgacctggttggagtaggtgtgtcact 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ccatttggaggtgtggccttgttggaataagtgtgacctggttggagtaggtgtgtcact 443

                                                                       
Query: 245 atgggtgtggacataagatcttcaacctagttgcctggaagttagtcttccactagcagc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atgggtgtggacataagatcttcaacctagttgcctggaagttagtcttccactagcagc 503

                                                        
Query: 305 cttcagatgaagacatagaactctcagctcctcctgcaccatgcc 349
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cttcagatgaagacatagaactctcagctcctcctgcaccatgcc 548


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 748
Length adjustment: 9
Effective length of query: 340
Effective length of database: 739
Effective search space:   251260
Effective search space used:   251260
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)