BAC Information

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BAC

Clone NameMSMg01-080I16
Chromosome3 (Build37)
Map Location 33,039,429 - 33,039,967
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnmb2, LOC665514, Zmat3, 4930429B21Rik, Pik3ca, Kcnmb3, Zfp639, Mfn1, Gnb4, LOC100040977, Actl6a, Mrpl47, Ndufb5, Usp13, Pex2
Downstream geneEG545512, LOC100041058, Ttc14, Ccdc39, LOC100040232, LOC100041072, Fxr1h, Dnajc19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080I16.T7 (MSMg01no080_i16.b1)MSMg01-080I16.TJ (MSMg01no080_i16.g1)
ACCAG301353AG301354
length729700
length of high quality
(start - end)
248 (57 - 304)542 (67 - 608)
definitionCHROMAT_FILE: MSMg01no080_i16.b1 PHD_FILE: MSMg01no080_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:29 2005CHROMAT_FILE: MSMg01no080_i16.g1 PHD_FILE: MSMg01no080_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTTGCGGCGCTAAACGACTCCTATTCGGAGAGGATCCGCGGAATTCCAA
CAACCCGCTTTACCACATCAAACCATTTCTGAGGGTCAGGAAATCGGGAG
TAGCTACCTGGAAGGTTCTACAGTTCAGGATGTCTCATGAATTTGGGATT
AAGCTTTTAGCTGAGGCCACAATCTTTCACAGCTCCAAAGGTCTGGAAAT
CTACTCACAGGGCCTGTCTCCAAGGCATGGGGAGGAGCCTCAGTTCCTCT
GACTGTTAGCAGAGAGTTTTAGCTTCTCACCTTATTCCTAATGTCATGAA
ATGGTACCTGGTATTTCTCACAGGTTAGTTGTTTGAGAGCAAGTAGGGAG
GTGGTCTTGGTACTCTCTATGAAGCTTATTTCTAGGTCATGCCCACAGTT
TCCCCCCCCCGACTTTTTCGTCATCTTATCCAGGTTTTATCTAACAGCAA
CTACTTGCCCCTTACGCTGATTGTTTCGCCCCCCCCACCTACCTACCCGT
TTCTTTCTAACTGATGCTATTAGTTAATGCTTACGGTGCCTCCCCTACCT
GCTTATTTCTTTACGCATTTCTATTGTGTTTTTACCCTTTTTGTACCCTT
TCCTTTCCCCTTTTTATTCCCCTATTTTCTTTTATTTCCCTTCCCCCCTT
TTCCCCCCCCCTCTTCTTTATTCCCCCGCTCTCCCTCTCCCCCTTTTCTC
CTTTTTTCTTTTCTTCCTCTCCCCTTTTA
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTGTTTATCCTTAAATCACTTCTGACAACCTGATT
CATGATATATGTCTTTGGTTACATTATTAAAAACCCACTCTCTTCCCCCA
ACACTGTCATTTAGCTTGTAGAAAGACCCTCCAGAGTACTGGTATACTTA
AAGAATAGCCATTCTTAAAAGGTTTAACTGCATCCTGTGTGTACCTGACT
CTAGTCACACACATGAACAAACACAGTGCAAACAACATTAATATTTTCAG
TTAAAATCCCAGTACATTCTTTATAGCATAGACCAGGAGCATGCATATTG
ACTGAGGCTGCTTCTAGCTTTGGGCTCATTGGAAAGGCTAATATGAATTA
TCTGCACCACGGCAGGTATAAAACAGAAAACCTTTGAGATCATTTCCTAT
GCCTTCGAAATCTTCTCTTTTCTGTGATCAAGATTTTTTTTAAAGTGCTT
TGTAAATAACAATCTGGAGTAGATGGGGGCTGTTCACATGAAGCCTTAAA
AATAGTCCAATTAAAACTCCTGCAGAGCCTTTGTGTTTGCAACTTATTGC
TTCTGCAAGTGCATTCTTGGGCCTGACTCCAGAAGGCAAACTGCTCTACT
TGTGGTACAAGCTTTATTCACCATCCTTTTAAATTATTCATTTGGCTCGC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_i16.g1 MSMg01no080_i16.g1 CHROMAT_FILE:
MSMg01no080_i16.g1 PHD_FILE: MSMg01no080_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:29 2005
         (542 letters)



>mm_chr3_33039229_33040167
          Length = 939

 Score =  986 bits (510), Expect = 0.0
 Identities = 533/542 (98%), Gaps = 3/542 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtttatccttaaatcacttctgacaacctgattcatgatatatgtctttggttacatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tgtttatccttaaatcacttctgacaacctgattcatgatatatgtctttggttacatta 680

                                                                       
Query: 61  ttaaaaacccactctcttcccccaacactgtcatttagcttgtagaaagaccctccagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ttaaaaacccactctcttcccccaacactgtcatttagcttgtagaaagaccctccagag 620

                                                                       
Query: 121 tactggtatacttaaagaatagccattcttaaaaggtttaactgcatcctgtgtgtacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tactggtatacttaaagaatagccattcttaaaaggtttaactgcatcctgtgtgtacct 560

                                                                       
Query: 181 gactctagtcacacacatgaacaaacacagtgcaaacaacattaatattttcagttaaaa 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 559 gactctagtcacacacatgaacaaacacagtgcaaacaacataaatattttcagttaaaa 500

                                                                       
Query: 241 tcccagtacattctttatagcatagaccaggagcatgcatattgactgaggctgcttcta 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tcccagcacattctttatagcatagaccaggagcatgcatattgactgaggctgcttcta 440

                                                                       
Query: 301 gctttgggctcattggaaaggctaatatgaattatctgcaccacggcaggtataaaacag 360
           |||||||||||||||||||||||||||||||||||||| |  | ||||||||||||||||
Sbjct: 439 gctttgggctcattggaaaggctaatatgaattatctgtattaaggcaggtataaaacag 380

                                                                       
Query: 361 aaaacctttgagatcatttcctatgccttcgaaatcttctcttttctgtgatcaagattt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aaaacctttgagatcatttcctatgccttcgaaatcttctcttttctgtgatcaagattt 320

                                                                       
Query: 421 tttttaaagtgctttgtaaataacaatctggagtagatgggggctgttcacatgaagcct 480
           ||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||
Sbjct: 319 tttttaaagtgctttgtaaataacaatctggagt---tgggggctgttcacatgaagcct 263

                                                                       
Query: 481 taaaaatagtccaattaaaactcctgcagagcctttgtgtttgcaacttattgcttctgc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 taaaaatagtccaattaaaactcctgcagagcctttgtgtttgcaacttattgcttctgc 203

             
Query: 541 aa 542
           ||
Sbjct: 202 aa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 939
Length adjustment: 10
Effective length of query: 532
Effective length of database: 929
Effective search space:   494228
Effective search space used:   494228
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)