BAC Information

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BAC

Clone NameMSMg01-080K07
Chromosome3 (Build37)
Map Location 152,812,591 - 152,812,926
singlet/doubletsinglet
Overlap genenone
Upstream geneGipc2, Dnajb4, Fubp1, Nexn, C030011O14Rik, Usp33, Zzz3, Ak5, LOC100040705, Pigk, Rpl29-ps1, St6galnac5
Downstream geneLOC100040750, St6galnac3, EG545578, Asb17, Msh4, Rabggtb, Acadm, Slc44a5, LOC100040980
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080K07.T7 (MSMg01no080_k07.b1)MSMg01-080K07.TJ (MSMg01no080_k07.g1)
ACCAG301431AG301432
length695693
length of high quality
(start - end)
371 (45 - 415)355 (72 - 426)
definitionCHROMAT_FILE: MSMg01no080_k07.b1 PHD_FILE: MSMg01no080_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:37 2005CHROMAT_FILE: MSMg01no080_k07.g1 PHD_FILE: MSMg01no080_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCTGTTTACCTCTGTATACCATTTTTAAATTGTGTTATTTGGTTTG
TTGATGTCTAATTCCTTGAGTACTTTATATATTTTGGATATTAGCCTTCT
GTTAGATGTAGGTTGGTGACAATCCTTTCCTAGTCTGTAGGCAGCCATAT
AGTCCTATTGGCAGTGTCCTTTGCCTTACCGAAGCTTTCCAGTTTCATGA
GGTCCCATTTATCAGTTGTTGATCTTGGAGCCAGAGCTGTTGATGTTCTG
TTAGGAAGTCGTCTCCTGTACCAATGCATTCAAGTCTATTCCCCATCTTC
TCTTCTATAAGATTTAGGGCATTAGGGTTTATGATGAGGTCTTTGGTCCA
CTTGGACTTGAGTCCCGCGTAGGGTGATAAATATGGATCTATTTGCATTC
TTCTACACTCAGACATCCAGTAAGACCAGCACCATTTGCTGCAAGTCAGA
GGGGTCAAGAACACTACAAGAAGACCTACAGTTTCAACTAATATGGGCCC
ATAGGAGCTCACAGAGTTTGTGCTACCATGCAGGGAGCATGTTGGAGCTG
CACTTAAATCCCCTTCACAGCTGTTGCAAATGTGCAACTCATTCCTCATG
TGGGTTCCCCTAACATCTGGACAGTAGGAGCTGCTCTCGGTCTCC
ATGAATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACCCAGGGATCTAGTCCAGGGCATGGTGA
CAGCAATGGTGCTTAGAATCATGAAGTACAGTCTTCTCACACGGTAAGAT
ATCCATAACCAAACTCAGTGTGGCCCTTCTTCAGTACATACATACATGTT
ATAAACGGCTGTCTTAGTCAGGGTTTCTATTCCTGCACAAACATCATGAC
TAAGAAGTAAGTTGGGGAGGAAATGGCTTATTCGGCTTACACTTCCATAC
TGCTGTTCATCACCAATGAATTCAGGACTGGAACTCAAGCAGGTCAGGAA
GCAGGAGCTGATGCAGAAGCCATGGAGGGATGTTCCTTACTGGCTTGCTT
CCCCTGGTTTGCTCAGCCTGCTCTCTTATAGAACCCAAGACTACCAGCAC
AGGCATGGTCCCACCCACAAGGCGACTTTCCCCCTTGATCCCTAATTGAG
AAAATGCCTTACAGCTGGATCTCTTAGAGGCATTTCCCCAACTGAAGCTC
CTTTCTCTGTTGAAACCCTTGCTTGTTGCCAGTTGACACAAAACTAGCCC
GTACCATCGTTTATATGCCTCCCCTGTTTACCCATACATAGGTCTTGAGA
TAGATACGAATCTGTATTCTCATCCGTACTCCACCCCCACCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_k07.g1 MSMg01no080_k07.g1 CHROMAT_FILE:
MSMg01no080_k07.g1 PHD_FILE: MSMg01no080_k07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:37 2005
         (355 letters)



>mm_chr3_152812589_152813343
          Length = 755

 Score =  559 bits (289), Expect = e-163
 Identities = 325/337 (96%), Gaps = 3/337 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   cccagggatctagtccagggcatggtgacagcaatggtgcttagaatcatgaagtacagt 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 cccagggatctagtccagggcatggtgacagcaatggtgcttagaatcatgaagtacagt 279

                                                                       
Query: 62  cttctcacacggtaagatatccataaccaaactcagtgtggcccttcttcagtacataca 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 cttctcacacggtaagatatccataaccaaactcagtgtggcccttcttcagtacataca 219

                                                                       
Query: 122 tacatgttataaacggctgtcttagtcagggtttctattcctgcacaaacatcatgacta 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 tacatgttataaacggctgtcttagtcagggtttctattcctgcacaaacatcatgacta 159

                                                                       
Query: 182 agaagtaagttggggaggaaatggcttattcggcttacacttccatactgctgttcatca 241
           ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 158 agaagcaagttggggaggaaatggtttattcggcttacacttccatactgctgttcatca 99

                                                                       
Query: 242 cc-aatgaattcaggactggaactcaagcaggtcagga-agcaggagctgatgcagaagc 299
           || || ||| ||||||||||||||||||||| | | || |||||||||||||||||| ||
Sbjct: 98  ccaaaggaagtcaggactggaactcaagcagatga-gagagcaggagctgatgcagaggc 40

                                                
Query: 300 catggagggatgttccttactggcttgcttcccctgg 336
           |||||||||||| || |||||||||||||||||||||
Sbjct: 39  catggagggatgctctttactggcttgcttcccctgg 3


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space:   258116
Effective search space used:   258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)