BAC Information

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BAC

Clone NameMSMg01-080M17
Chromosome3 (Build37)
Map Location 63,952,022 - 63,952,568
singlet/doubletsinglet
Overlap gene4930518C23Rik
Upstream geneLOC666967, Mme, Plch1, LOC100040836, E130311K13Rik, Slc33a1, Gmps, LOC670032, EG56544
Downstream geneLOC380739, EG637004, EG667031, EG637053, LOC672951, EG639869, EG667060, EG667069, LOC100040918, 4933425M15Rik, LOC670110, Kcnab1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080M17.T7 (MSMg01no080_m17.b1)MSMg01-080M17.TJ (MSMg01no080_m17.g1)
ACCAG301546AG301547
length711708
length of high quality
(start - end)
551 (34 - 584)512 (66 - 577)
definitionCHROMAT_FILE: MSMg01no080_m17.b1 PHD_FILE: MSMg01no080_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:48 2005CHROMAT_FILE: MSMg01no080_m17.g1 PHD_FILE: MSMg01no080_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTGCGGCGCTAAACGACTCCTATATCGAGAGATCCGCGGAATTCAAAAGG
CTCCCAATAGTAAGGTTTTTTTTTTTTTTTAGTGGCAAACAGTAAGGCAA
TGATGAATGGCACACAAACTAAAATGCCAATATAGGTCTGAAAAAAAATC
CCGGAAATTCTAAAGTAGGGGATAATTATAAATGTCTCAAGGAAACAGTT
AGTGATCAAACTCTCTTTTAGCTTTTTCTTTCCTTTCTGTTTTTCCCCCT
TTGGTTTGATTTCGTTTTATCTTTGAGATAGAGAAACTCCTGTAGCCCTG
GATGTCCAGGAATTTACTCTATGGCTCAGGCTGGCATTGAACTCTCATTC
CCCCACCCCCCCTCTCTCTCTCTCTCTCTCTGTACAGGGTTACAGTGTAC
AAAACCACAGAGATCCTCCCACTTATGCCTTCTAAGTGTTGGAAACAAAG
GTGACTGATCTTTTTCTTAAAAAGTATGTATGAAAATGACCTGTAGGCTA
TTGCCACATTAGTAAAGTACATATGGAAATACTTTAAAACTATTTTTAAA
TGTTTAGCAATTACCAAGGATATATTATTTTTATAGAAATAAGTAAGAAA
TGGCAATGAAAGAAGCTAAGTAATGAAACATCACACCGAAAGGCTTTGCG
TGATGCAAGAATTCAAGTGGAACGACTTCTTTCTAAATTCTCTGAACAAG
GTGCAAATTGG
GTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXATCTGATATACAGTTACCAAACCCAGACACTATTG
AGAATGCCAAGAAGTGCATGTTGAAAGGAGCTTGATATGGCTGTCCACTG
AGAATTGCTGACAGAGCCTTACAAATGCAGAGACTGGCTCTATAAGTAAC
CTCTCCCTACTGTTGGACATTTTATCTAAGCCCCTTCCTTTTAAGTCACC
TCCCAAGTCTCTGATGCATTCTGAGGCGTCCCACCACCAACTTCCTATTT
CCTGAAGTGGCCTTTTACATTCTCTCTGCTGGTTCTCAGGGTTTCCTTTT
CCCTCACACAATACCAGATCACGACCCCTTTCCCCACTGTGCCTCTCCAC
ACCCTGGCCACTTCTGCTCCCAGGTCCCTCCCTTCCTATCTAGGATTGCT
TTCCTCGCCTTTCAAGTGAGACTGAAGTGTCTTCACTTAGACACTTCAGC
TTGTGGAGTTTTATGAGTTCTGTGGACTGTATCTTGGGTATTCTGTACTT
TTATTTGGGCTACTACCCACTTATTAGCGAGTACATACAATGCATGTCCT
TTGGGTTTGAGTTACCTCACTCAGGATGATATTTTCTACTTCCATTCATT
TGCCTGTAAAACTCAGGATGCACTCATTCTTAATAATTGAGCAGGATTCC
ATTGCGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_m17.b1 MSMg01no080_m17.b1 CHROMAT_FILE:
MSMg01no080_m17.b1 PHD_FILE: MSMg01no080_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:48 2005
         (551 letters)



>mm_chr3_63951818_63952768
          Length = 951

 Score = 1035 bits (535), Expect = 0.0
 Identities = 544/547 (99%), Gaps = 1/547 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcaaaaggctcc-caatagtaaggtttttttttttttttagtggcaaacagtaagg 64
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaaaggctcaacaatagtaaggtttttttttttttttagtggcaaacagtaagg 264

                                                                       
Query: 65  caatgatgaatggcacacaaactaaaatgccaatataggtctgaaaaaaaatcccggaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caatgatgaatggcacacaaactaaaatgccaatataggtctgaaaaaaaatcccggaaa 324

                                                                       
Query: 125 ttctaaagtaggggataattataaatgtctcaaggaaacagttagtgatcaaactctctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttctaaagtaggggataattataaatgtctcaaggaaacagttagtgatcaaactctctt 384

                                                                       
Query: 185 ttagctttttctttcctttctgtttttccccctttggtttgatttcgttttatctttgag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttagctttttctttcctttctgtttttccccctttggtttgatttcgttttatctttgag 444

                                                                       
Query: 245 atagagaaactcctgtagccctggatgtccaggaatttactctatggctcaggctggcat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atagagaaactcctgtagccctggatgtccaggaatttactctatggctcaggctggcat 504

                                                                       
Query: 305 tgaactctcattcccccaccccccctctctctctctctctctctgtacagggttacagtg 364
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 505 tgaactctcattcccccaccccccccctctctctctctctctctgtacagggttacagtg 564

                                                                       
Query: 365 tacaaaaccacagagatcctcccacttatgccttctaagtgttggaaacaaaggtgactg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tacaaaaccacagagatcctcccacttatgccttctaagtgttggaaacaaaggtgactg 624

                                                                       
Query: 425 atctttttcttaaaaagtatgtatgaaaatgacctgtaggctattgccacattagtaaag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atctttttcttaaaaagtatgtatgaaaatgacctgtaggctattgccacattagtaaag 684

                                                                       
Query: 485 tacatatggaaatactttaaaactatttttaaatgtttagcaattaccaaggatatatta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tacatatggaaatactttaaaactatttttaaatgtttagcaattaccaaggatatatta 744

                  
Query: 545 tttttat 551
           |||||||
Sbjct: 745 tttttat 751


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space:   509081
Effective search space used:   509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)