Query= MSMg01no080_p04.b1 MSMg01no080_p04.b1 CHROMAT_FILE:
MSMg01no080_p04.b1 PHD_FILE: MSMg01no080_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:00 2005
(641 letters)
>mm_chr3_101357229_101358269
Length = 1041
Score = 1129 bits (584), Expect = 0.0
Identities = 625/640 (97%), Gaps = 5/640 (0%)
Strand = Plus / Plus
Query: 5 gaattcagcaaaaacccc-cccactcctcttgatgggtatgtagaaggttcgtccctaaa 63
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcagcaaaaacccaacccactcctcttgatgggtatgtagaaggttcgtccctaaa 263
Query: 64 aacccaattcttgcaaaaagccaatagcaactcccagggctagtgatggttctcctgttt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aacccaattcttgcaaaaagccaatagcaactcccagggctagtgatggttctcctgttt 323
Query: 124 cccgtcctgctatgtatcgtaattatttggaaaagtaacttgacagggtaggtagtacac 183
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 324 cccgtcctgctatgtatcgtaattatttggaaaagtaacttgacagggtgggtagtacac 383
Query: 184 aaagagctataaggttacagatatcctttggtttgggaatttcatgtttcatgtttcagc 243
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 384 aaagagctataaggttacagatatccgttggtttgggaatttcatgtttcatgtttcagc 443
Query: 244 taaagaaaataaatctgattagagaaataccccacataggattgcagatgttcagttggt 303
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 444 taaagaaaataaatctgattagagaaataccccacataggattgcagatgctcagttggt 503
Query: 304 agagtgctctcccagcaaaggaagccccgagggatcacccgcctcattcagggatcactc 363
||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 504 agagtgctc--ccagcaaaggaagccccgaggggtcacccgcctcattcagggatcactc 561
Query: 364 aggaggtagaggcaggatgatcaggaattcacaattattcttggctgcttatggagttag 423
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aggaggaagaggcaggatgatcaggaattcacaattattcttggctgcttatggagttag 621
Query: 424 aggccagcctaagctacacgaaacttagaaagagagagagagagagacagagacaga--g 481
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
Sbjct: 622 aggccagcctaagctacacgaaacttagaaagagagagagagagagagacagacagacag 681
Query: 482 agagacagagaagagaaagacaagaaagtggatatttaggaaagaaaaaaagtaaaaaga 541
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 682 agagacagagaagagaaagacaagagagtggatatttaggaaagaaaaaaagtaaaaaga 741
Query: 542 aagtgtgaatttgttcatgtaaataaaaatgtgcatcttagaaacatttataatatggaa 601
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 742 aagtgtgaatttgttcatgtaaataaaaatgtgcatcttagaaacgtttataatatggaa 801
Query: 602 cacaaatggtagcaatgactgtttaagtatttgctaagaa 641
||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 cacaaatggtagcaatgactgtttaagtatttgctaagaa 841
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space: 650561
Effective search space used: 650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no080_p04.g1 MSMg01no080_p04.g1 CHROMAT_FILE:
MSMg01no080_p04.g1 PHD_FILE: MSMg01no080_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:00 2005
(608 letters)
>mm_chr3_101453103_101454110
Length = 1008
Score = 1129 bits (584), Expect = 0.0
Identities = 602/608 (99%)
Strand = Plus / Minus
Query: 1 ttcagaagaatgttcaagagcaatctccagttgctgagcaacccacaagctgaagtgggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 ttcagaagaatgttcaagagcaatctccagttgctgagcaacccacaagctgaagtgggc 749
Query: 61 atggtctttgctgcctcttctcataacatctacatacaagcctgttgtagagtaagtgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 atggtctttgctgcctcttctcataacatctacatacaagcctgttgtagagtaagtgat 689
Query: 121 tgtcagggtcaccctagccaacagcagcaacagagacctatccagcatagcactcggctg 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 tgtcagggtcagcctagccaacagcagcaacagagacctatccagcatagcactcggctg 629
Query: 181 ctttaagccatgggagcaaatagtgccaacaggccacagggtgttgcaagcacatgtcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ctttaagccatgggagcaaatagtgccaacaggccacagggtgttgcaagcacatgtcct 569
Query: 241 ggctgataatgatacagggtgaatgctaccacagcactgtcctacccatccctcaactgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ggctgataatgatacagggtgaatgctaccacagcactgtcctacccatccctcaactgt 509
Query: 301 cactgtctctggagatggaagtggagggacaactacttacactcaaggaagagttctctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 cactgtctctggagatggaagtggagggacaactacttacactcaaggaagagttctctg 449
Query: 361 agcagttcttttcttgagtaagtttattgaatttgctctagctcagagatcatccttagg 420
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 448 agcagttcttttcatgagtaagtttattgaatttgccctagctcagagatcatccttagg 389
Query: 421 ggggaaggtgctgaaccacgagtcatcatcaaaatgaatgcagtccacagttctcttact 480
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gaggaaggtgctgaaccacgagtcatcatcaaaatgaatgcagtccacagttctcttact 329
Query: 481 tcagattaaaaaaacaccaacgtactgccagacctatcatctggggctctgccaaatctc 540
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tcagatttaaaaaacaccaacgtactgccagacctatcatctggggctctgccaaatctc 269
Query: 541 cacagacaagcaggaacctgcaccaggcagctctgaactctcacctttctttctataggc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 268 cacagacaagcaggaacctgcaccaggcagctctgaactctcacctttctttctacaggc 209
Query: 601 ctctgaat 608
||||||||
Sbjct: 208 ctctgaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space: 596804
Effective search space used: 596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
