Query= MSMg01no081_f03.b1 MSMg01no081_f03.b1 CHROMAT_FILE:
MSMg01no081_f03.b1 PHD_FILE: MSMg01no081_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:29 2005
(400 letters)
>mm_chr3_79917226_79918031
Length = 806
Score = 700 bits (362), Expect = 0.0
Identities = 390/402 (97%), Gaps = 6/402 (1%)
Strand = Plus / Minus
Query: 5 gaattctcctccca-aaccctttgtgtgggtgaacaaaggcacagcataagtaataactg 63
|||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 606 gaattctcctcccacaatcctttgtgtgggtgaacaaaggcacagcatgagtaataactg 547
Query: 64 tgtcctgtccacagaagctttttctcacaatattaagcttcacaacatcaacaataaact 123
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 546 tgtcctgtccacagaagcttttactcacaatattaagcttcacaacatcaacagtaaact 487
Query: 124 atcctgag-----aagtcttgagactctcacttttgatttcccatcaatgagtttgtctc 178
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 atcctgagaagtaaagtcttgagactctcacttttgatttcccatcaatgagtttgtctc 427
Query: 179 atccttatatgtgaccatgtgttaatacataattccacgattaagaactttttgcattgt 238
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 426 atccttatatgtgaccatgtgttaatacataattccacgattaagaactttttgcattat 367
Query: 239 ctcttagaaatggtcacaaaatgtagaaaaatcattttcaaatatattaataataatcta 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ctcttagaaatggtcacaaaatgtagaaaaatcattttcaaatatattaataataatcta 307
Query: 299 tgttattgttttgtacttaggcaaatcaacccattttttcttacatttcagtacaagagc 358
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 306 tgttattgttttgtacttaggcaaatcaacccattttttcttaaatttcagtacaagagc 247
Query: 359 tgatctctcatatctatcccattgatttgtatacctcctcat 400
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tgatctctcatatctatcccattgatttgtatacctcctcat 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 806
Length adjustment: 9
Effective length of query: 391
Effective length of database: 797
Effective search space: 311627
Effective search space used: 311627
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no081_f03.g1 MSMg01no081_f03.g1 CHROMAT_FILE:
MSMg01no081_f03.g1 PHD_FILE: MSMg01no081_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:29 2005
(265 letters)
>mm_chr3_79737724_79738388
Length = 665
Score = 487 bits (252), Expect = e-142
Identities = 261/264 (98%)
Strand = Plus / Plus
Query: 1 aacaaacagtaatggtgattggcatccttattgcttacctgaagacatttagccacaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacaaacagtaatggtgattggcatccttattgcttacctgaagacatttagccacaata 260
Query: 61 ggcttctttgcaggatgcccacttaagaacagagacagactggcactgcgggcacttttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcttctttgcaggatgcccacttaagaacagagacagactggcactgcgggcacttttg 320
Query: 121 caatgcttaagtgttttgctttaatgtgtgcactgaacaagcacattaaaatatcatctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caatgcttaagtgttttgctttaatgtgtgcactgaacaagcacattaaaatatcatctg 380
Query: 181 gggttcacagctatgcgcgatgtgctttattaggctttaaaaattggcgcgccatcttga 240
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 381 gggttcacagctatgcgcgatgtgctttattaggctttaaaaattggcgcactatcttga 440
Query: 241 aagtacacataactgcatttggca 264
||||||||| ||||||||||||||
Sbjct: 441 aagtacacagaactgcatttggca 464
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 265
Length of database: 665
Length adjustment: 9
Effective length of query: 256
Effective length of database: 656
Effective search space: 167936
Effective search space used: 167936
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
