BAC Information

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BAC

Clone NameMSMg01-081I10
Chromosome3 (Build37)
Map Location 90,095,676 - 90,096,169
singlet/doubletsinglet
Overlap genenone
Upstream geneEfna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b
Downstream geneGatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8, S100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541, LOC635737, EG668174, LOC668179, LOC635756, 4930529C04Rik, 9130204L05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081I10.T7 (MSMg01no081_i10.b1)MSMg01-081I10.TJ (MSMg01no081_i10.g1)
ACCAG302108AG302109
length702698
length of high quality
(start - end)		498 (41 - 538)426 (68 - 493)
definitionCHROMAT_FILE: MSMg01no081_i10.b1 PHD_FILE: MSMg01no081_i10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:45 2005CHROMAT_FILE: MSMg01no081_i10.g1 PHD_FILE: MSMg01no081_i10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTACTCTCCGTGAGGCAAGTACTGGCCATCCTATCTTACAGATGAGGACA
ATAAGGTATCGATTAAAAGACAAAGTTACACATGTGACAGACTTGAGATT
TTAACCCATGTGTACTAAGGAACAGGGTCAGATTAAGCAACTTGCCAAAG
GTAGACAGCAACTAAGCAATGATTAAAAGTCAGATCTAACTAGTGCCAAA
GACAGTAGAGAAGACATTTTTTCAAATCACTATGGAAATAAAATTGTAAG
CCTGACATGATGGTGCACAAATGTAACTTCACCACTGGGATGCTGAGGTC
ACAGGTTAGCCAAGGCTAGATATGAAGATGTTTCAGATTCCTTTAAAGGG
GGGCTGAAGAGATGGTTCAATAGTTAAGCACTTGTTGCTCCTCAGAGGAC
CCAGGTACCTATCTGTAATTCCAGTTCAAGGTCTCCATAGCACCCCTCTG
ACTTCCCTGAGCACCAGGGGCTCCTACAGTGCATACACATTCATGCAAGG
AAAACACAGTTTGTAAATACCTAAAAATTAATTTGTTAAGAGTTGACCTA
GAGATGGCACACGCCTTTAATCCCAGCACTCGTGAGGCAGAGGCAGGCAG
ATTTCTGAGTTTGAGGCTAGCCTGGTCTACTATGCGAGTCCAGGACAGTC
AT

ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTGTACAATGAATGCATTAAACAGAAAAGAGCTG
CCAAGGTCCCTGCATTCCTTTCCAGATTTGAATTCAAGCTGACTTTGATG
TGTTTCTTCCCTTCCTTCCTCTTTCTCTTTCTTTCTTTCTTCCTTTCTTT
CTTTCTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCT
TCCTTCCTTCCTTCCTTTCCTTTCTTTCTTTATTTCTTTTTTTGTGTGTG
TGTGTTTTGTTTTCTGAGACAGGTTTTCTTTGTAGCCATGCCTGTGCTTG
AACTCCCTCTGTGGATGAGGCTCGTCTCAAATATACAGAGGTATATACAA
AATATACCTGCCTCTGCCTCCTGAGTGCTGAGACTAAAGGCCTGCGTGAT
CAGGTCCCACTTTGGTGTGTTACTTCTTGTTACTATGATAAGACACCACG
ACTAAGACAACTTATGGACAGAACGCTTATTTGGCGCTTATGTTTCCAGA
GGGATAGAGATCCATCCTTATCATGACAGGGGTCTTGGCAGCTGGCATTC
ACATCTGTATCCACAAACCGGATACATAGAGCACTCTGGTTAAGTGTAAG
GCTCCTGAAACCTTAAGCTTGCCCTTGGTGCCATCTTTCCTTCAAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_i10.b1 MSMg01no081_i10.b1 CHROMAT_FILE:
MSMg01no081_i10.b1 PHD_FILE: MSMg01no081_i10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:45 2005
         (498 letters)



>mm_chr3_90095611_90096508
          Length = 898

 Score =  924 bits (478), Expect = 0.0
 Identities = 490/494 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttactctccgtgaggcaagtactggccatcctatcttacagatgaggacaataa 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gaattcttactctctgtgaggcaagtactggccatcctatcttacagatgaggacaataa 500

                                                                       
Query: 65  ggtatcgattaaaagacaaagttacacatgtgacagacttgagattttaacccatgtgta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ggtatcgattaaaagacaaagttacacatgtgacagacttgagattttaacccatgtgta 440

                                                                       
Query: 125 ctaaggaacagggtcagattaagcaacttgccaaaggtagacagcaactaagcaatgatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 439 ctaaggaacagggtcagattaagcaacttgccaaaggtagacagcaactgagcaatgatt 380

                                                                       
Query: 185 aaaagtcagatctaactagtgccaaagacagtagagaagacattttttcaaatcactatg 244
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 379 aaaagtcagatctaactagtgccagagacagtagagaagacattttttcaaatcactatg 320

                                                                       
Query: 245 gaaataaaattgtaagcctgacatgatggtgcacaaatgtaacttcaccactgggatgct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gaaataaaattgtaagcctgacatgatggtgcacaaatgtaacttcaccactgggatgct 260

                                                                       
Query: 305 gaggtcacaggttagccaaggctagatatgaagatgtttcagattcctttaaaggggggc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gaggtcacaggttagccaaggctagatatgaagatgtttcagattcctttaaaggggggc 200

                                                                       
Query: 365 tgaagagatggttcaatagttaagcacttgttgctcctcagaggacccaggtacctatct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 tgaagagatggttcaatagttaagcacttgttgctcctcagaggacccaggtacctatct 140

                                                                       
Query: 425 gtaattccagttcaaggtctccatagcacccctctgacttccctgagcaccaggggctcc 484
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 gtaattccagttcaagggctccatagcacccctctgacttccctgagcaccaggggctcc 80

                         
Query: 485 tacagtgcatacac 498
           ||||||||||||||
Sbjct: 79  tacagtgcatacac 66


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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