Query= MSMg01no081_i21.b1 MSMg01no081_i21.b1 CHROMAT_FILE:
MSMg01no081_i21.b1 PHD_FILE: MSMg01no081_i21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:48 2005
(555 letters)
>mm_chr3_132174499_132175452
Length = 954
Score = 977 bits (505), Expect = 0.0
Identities = 544/557 (97%), Gaps = 6/557 (1%)
Strand = Plus / Plus
Query: 1 taaaatccctttgat-aaataaattacgaagtgacccaattcaaatgggctttgatgtgt 59
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 taaaatccctttgataaaataaattatgaagtgacccaattcaaatgggctttgatgtgt 260
Query: 60 aaggagatggtgttttcacttatgtgagaaagttttttatttttttttatttttaaatca 119
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 aaggagatggtgttttcacttatgtgagaaagtttttta-ttttttttatttttaaatca 319
Query: 120 tttagcccaatctagaacagagaagagggaggagacttatctgcaccgatctttccttaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tttagcccaatctagaacagagaagagggaggagacttatctgcaccgatctttccttaa 379
Query: 180 ggaaaaataacatgcctgtgagagatgagatatatagccaaccactaagacgtgtcttat 239
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 380 ggaaaaataacatgcctgtgagagatgagatatgtagccaaccactaagacgtgtcttat 439
Query: 240 acaacaaaatataaatagacatggagacaggtgggcaccgatttaagctcagagcatcca 299
||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 440 acaacaaaagaaaaatagacatggagacaggtgggtaccgatttaagctcagagcatcca 499
Query: 300 tagctaagcagcaacgtgtgcctgcctttggtccacaaactcctctgtgctgtgtgctct 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 500 tagctaagcagcaacgtgtgcctgcctttggtccacaaactcctctgtgctgtgcgctct 559
Query: 360 gctcactggcagaacaaacactcctagggatagatgctttccaaagtccaaagtgttaag 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 560 gctcactggcagaacaaacactcctagggatagatgctttccaaagtccaaagtgt-aag 618
Query: 420 atctgcccaaacaaagccagctctctttgatcctttttt-aatttcccccttgcgtgcca 478
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 619 atctgcccaaacaaagccagctctctttgatcctttttttaatttcccccttgcgtgcca 678
Query: 479 cctcagtgggaccaccaaagttttgcctccgatgatttccgaaacccactttcaattttt 538
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 cctcaatgggaccaccaaagttttgcctccgatgatttccgaaacccactttcaattttt 738
Query: 539 tttttccgttta-aaaa 554
|||| ||||||| ||||
Sbjct: 739 tttt-ccgtttagaaaa 754
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 954
Length adjustment: 10
Effective length of query: 545
Effective length of database: 944
Effective search space: 514480
Effective search space used: 514480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no081_i21.g1 MSMg01no081_i21.g1 CHROMAT_FILE:
MSMg01no081_i21.g1 PHD_FILE: MSMg01no081_i21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:48 2005
(533 letters)
>mm_chr3_132328372_132329304
Length = 933
Score = 893 bits (462), Expect = 0.0
Identities = 513/530 (96%), Gaps = 2/530 (0%)
Strand = Plus / Minus
Query: 1 ttgcagcttctttattatcatgataacctgtcatttccttatctcgagctaacaggtgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 ttgcagcttctttattatcatgataacctgtcatttccttatctcgagctaacaggtgaa 670
Query: 61 tacctctagattttgaatccatttgtattgtgtgcttgttactgggtgggagaggcagtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tacctctagattttgaatccatttgtattgtgtgcttgttactgggtgggagaggcagtc 610
Query: 121 ttccttgagtttctcactggcctggcgtctca-gctaacagcccagcacagatgtcttgc 179
|||||| | ||||||||||||||||||||| | |||||||||||||||| ||||||||||
Sbjct: 609 ttccttaattttctcactggcctggcgtct-aggctaacagcccagcacggatgtcttgc 551
Query: 180 tttctccatgttcttgaattctgtgcattgacttggctgtcttctcatgcttcatgatcc 239
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tttttccatgttcttgaattctgtgcattgacttggctgtcttctcatgcttcatgatct 491
Query: 240 tcagtctggcatttcattctaattctcttcttgttcatgaggcatttaatgtcctgcaaa 299
||||||||||||||||| ||||||||||||||||||||||||||| ||||||| || |||
Sbjct: 490 tcagtctggcatttcatcctaattctcttcttgttcatgaggcatgtaatgtcttggaaa 431
Query: 300 agttaatatttataaagagaaacctaaactttaatatatgagattacttaaatagcttta 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 agttaatatttataaagagaaacctaaactttaatatatgagattacttaaatagcttta 371
Query: 360 tcacttagagtatgcctaaccacactgaacacaaataactgcttagatttggtctgagta 419
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 370 tcacttagagtatgcctaaccacactgaacacaaataactgctcagatttggtctgagta 311
Query: 420 ctcatcttatatatgcttccataccaactactacttcggaagcagcaaatctcataagga 479
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 310 cacatcttatatatgcttccataccaactactgcttcggaagcagcaaatctcataagga 251
Query: 480 acagcaatttaaaccacgtgtgtcagctggtcttggagtgttttgtcttg 529
||||||||||||||||| || | |||||||||||||||||||||||||||
Sbjct: 250 acagcaatttaaaccacatgcggcagctggtcttggagtgttttgtcttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space: 482729
Effective search space used: 482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
