BAC Information

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BAC

Clone NameMSMg01-081N12
Chromosome3 (Build37)
Map Location 17,482,673 - 17,482,772
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040034, LOC100040059, EG383936, LOC622737
Downstream geneENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5, Cyp7b1, LOC622921, LOC100040153
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081N12.T7 (MSMg01no081_n12.b1)MSMg01-081N12.TJ (MSMg01no081_n12.g1)
ACCAG302352AG302353
length747759
length of high quality
(start - end)
100 (138 - 237)55 (73 - 127)
definitionCHROMAT_FILE: MSMg01no081_n12.b1 PHD_FILE: MSMg01no081_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:10 2005CHROMAT_FILE: MSMg01no081_n12.g1 PHD_FILE: MSMg01no081_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCTGCGTGCCAATAGAGTGGCAGCCATTTTTTTTCCCAGCTCACATCA
AAACGCCTTTCATCTGCTGCCTAAACGCAAACAAAGCAAACCTTCCGCCA
GGCCTTTCTTTCCAGATAAACTAAAACTCTCGTGTCCTGGGGCCTAAATC
AAGCCTACAGGCCTTCCCTAGATAAATCCGCTCTCAATCCGAATTCTTCT
CTTCACTCTTGCTCCTTGTAAGATAATTTTGCAGTAGCTAATCTATAATG
CTCCAGTAATTTGTTTTTTTTTAAATATTAGCGTCTCCTCTTTATGATTA
ATATCTCATCTGCAATTTGACAAAGACATAAATAATGTACTCTTTTGATA
TTTCATTACATCATTGCAAATTGCAGCTTTGATGGTTTTCATCGTCGACT
CAATTACCATCGCGCGTCCTTGTATTTCTTATAGGTTTGCTTTTTTTTCC
TTCTGTTGATAATATTTAAAATAATACACAATAACTTTAAAACTGCATCT
CATATGTCTGCATCCTCTCTGTCTCAAATTAAAATGCTAAAAATTCTTGT
ATAACATAGAAAACTACAAATCTCCTAAATCATGCTTTACAACCCTATAA
ATATCCTGCTTGAAACATTATAAAATGCAAATAATTGTACTTAGTTTAAT
TTCACATAAGACCACTAGATATAGTTGCTTCCTCAAACCCTTAACCG
TGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATTGCTTTTAATAGCTGACTAATGACGTT
GAACATTTCTTTAGATGCTTCTCATCCATTTGGTATTCCTCAATTGAGAA
TTCTTTGTTTAGCTCTGTACCCCATTTTTAATAGGTTATTTTGTTCTCTG
GAATCTAACTTGTTGAGATCTTTTTATATATTGGATATTAGCCCTCTATT
GAATAAAGAGGTGATAAAGATCCTTACCCCATTCGTTGTCCGCTGTCCTT
GTCCTATCGACAAACCCCTTTGCCTTATAGATGTTTTGTTTTTTCTCGAA
ATCCTCTTTTATTTTTTCTTGACTTTAGATGTTTAGTTTATATGTTTTCT
CGTTTTCTATTCCTCCCCCTGTGCACCCGCATCTTTAGTCTTTCCACCAC
TCCTTTACCTCTAATCCCACTGCCCACCCGCCCTCTACCAAACTCCCACC
GCATACACTTGTCTTCGTTCTTTTCACCCGCTTCTTTTCTCTGTTCTGTT
TCCCCCTTTTCTGTTATTAATGCACCTCCTTTACAACCTGTTACAATTTT
TTATATTATTATTCTCTCCTCTTACTCTCCCTTTATTTATTTTTTTTTCT
CCTCTATTTTCTCTCTTCTATTTTACTCTCTCTACCTTTTCTTATCCTTC
GTATTATTTAATTTACTTTTTTATTATATCTTTCCTCGATACTTAATATC
CAACAATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_n12.b1 MSMg01no081_n12.b1 CHROMAT_FILE:
MSMg01no081_n12.b1 PHD_FILE: MSMg01no081_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:10 2005
         (100 letters)



>mm_chr3_17482473_17482972
          Length = 500

 Score =  186 bits (96), Expect = 4e-52
 Identities = 99/100 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaccttccgccaggcctttctttccagataaactaaaactctcgtgtcctggggcctaa 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 aaaccttccgccaggcctttctttccagataaattaaaactctcgtgtcctggggcctaa 260

                                                   
Query: 61  atcaagcctacaggccttccctagataaatccgctctcaa 100
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcaagcctacaggccttccctagataaatccgctctcaa 300


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 100
Length of database: 500
Length adjustment: 8
Effective length of query: 92
Effective length of database: 492
Effective search space:    45264
Effective search space used:    45264
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)