BAC Information

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BAC

Clone NameMSMg01-081O18
Chromosome3 (Build37)
Map Location 83,251,216 - 83,392,482
singlet/doubletdoublet
Overlap gene1700028M03Rik, LOC100042007
Upstream geneNpy2r, LOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094, Dchs2
Downstream geneLOC100042091, Sfrp2, LOC633522, Tlr2, D930015E06Rik, Mnd1, Trim2, EG624713, 6330505N24Rik, Arfip1, EG667788, EG627369
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081O18.T7 (MSMg01no081_o18.b1)MSMg01-081O18.TJ (MSMg01no081_o18.g1)
ACCAG302412AG302413
length709712
length of high quality
(start - end)
319 (61 - 379)331 (65 - 395)
definitionCHROMAT_FILE: MSMg01no081_o18.b1 PHD_FILE: MSMg01no081_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:16 2005CHROMAT_FILE: MSMg01no081_o18.g1 PHD_FILE: MSMg01no081_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,251,216 - 83,251,534)(83,392,152 - 83,392,482)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTAG
GTATAGCTCCATGTCATTGCACTTGCTTAGTTCTCATGTTCAAGATCACT
AACATCATTCTCAACAATAGCGCTTTTATCTTAATTACCTCCCAACCTAT
CTCCTAAATTAACCCTTGTAATACAGTTTCAGCATAGATTTTATTCTGTG
TGATGGACCTCTGGTTTGTCTGCTTCTAAACTCTAAGTGCCATTTGCTCA
ACCAATTTGAGCCACATGGTCATTTCAGGCTTGTTCCTGGTAGCACCTTG
GAGTCCCTCCTGCTATGATCTCTGAGTACCATGTCCAAATCATTCTACCC
CTTCTCACTGATCCCAATGCTTTGCTCAGCTGAAGAAAACACTGCGTTGT
CCACACTTGGCTGCTGTCACATGGGTCCTAGGTACATCTCATCATTCTTT
AATGCTCAAATCACCCCTTAATTCTTACCTGTCATCACATCAGGAGTTTG
AAATTGCCTCCTACATTAGACTCATGACTTTCAGAAATGAGCCCAATTCC
TAGGGCATGCTATAAATGAATGACAGATTTGCAGGCACAAGTCTCACATC
CCTATAGTCTGATAAGCATGTCTTACCCCATTCTTTCCTTCTTTAACCTA
TGCAGAGCTTTATAAGTGTGCCCAAATCTTTCTTTCCATCCTTCCTCCCT
ATCATATGC
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAGTAGGCATCAAAAGAGGGACACATTAGCACATTAC
ATCATCTTATATGCATAAATATTCACAATACACATTTATAATGCAAATAC
TAATCAAAAATATCTTAAATAATGATGAAAATAAGTTTTAATAATTTTTC
TTTAGATTCAGAAACAGTAACATTGTTGCGTCTCATTTTTAAAATGTCAC
TCAAACTAAGCCAAGTATTTTGTGTATAGAGTAAATTTTGTAATTACAAA
CAGAACTGCTGAATTATTCCCCATGGTGCTCTGCATCAAGGCTTCAATTT
TTTAAGAAAATGTAACCATTCAAGTGGTGACACAAAATGACAAAAGCAAT
TCCAAGGTTTCCTAATTTTTAAAAGTTGTTATCTATTTTTAAATGTATTA
TTAGAGTCAAATGGTGGTAACATTTGGAGCCTGCTATTTAAACACAGGAT
TATGTCATACAACAGGCATTGGGGAGTCCAGGCAGACCTGGCTTAGGCCA
AGGGGAGGAGTTTGAACCTTTGAACTTACCCTTAAAGAGACCATCCCTAG
CTGAGTTTGTGGTAACGAGAAACAAACTTTCCAAATAAACTTTCCATTTA
CAAAACCAAAATGCATGAATTTGATGTTCTTTATTATCATGGCATGATGG
CAACAGCAACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_o18.b1 MSMg01no081_o18.b1 CHROMAT_FILE:
MSMg01no081_o18.b1 PHD_FILE: MSMg01no081_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:16 2005
         (319 letters)



>mm_chr3_83251016_83251734
          Length = 719

 Score =  578 bits (299), Expect = e-169
 Identities = 314/319 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtcattgcacttgcttagttctcatgttcaagatcactaacatcattctcaacaatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgtcattgcacttgcttagttctcatgttcaagatcactaacatcattctcaacaatag 260

                                                                       
Query: 61  cgcttttatcttaattacctcccaacctatctcctaaattaacccttgtaatacagtttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgcttttatcttaattacctcccaacctatctcctaaattaacccttgtaatacagtttc 320

                                                                       
Query: 121 agcatagattttattctgtgtgatggacctctggtttgtctgcttctaaactctaagtgc 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 agcatagattttattctatgtgatggacctctggtttgtctgcttctaaactctaagtgt 380

                                                                       
Query: 181 catttgctcaaccaatttgagccacatggtcatttcaggcttgttcctggtagcaccttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catttgctcaaccaatttgagccacatggtcatttcaggcttgttcctggtagcaccttg 440

                                                                       
Query: 241 gagtccctcctgctatgatctctgagtaccatgtccaaatcattctaccccttctcactg 300
           ||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 441 gagtccctcctgctaggatctctgagtaccatggccaaaccattctaccccttctcactg 500

                              
Query: 301 atcccaatgctttgctcag 319
           |||||||||||||||||||
Sbjct: 501 atcccaatgctttgctcag 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no081_o18.g1 MSMg01no081_o18.g1 CHROMAT_FILE:
MSMg01no081_o18.g1 PHD_FILE: MSMg01no081_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:17 2005
         (331 letters)



>mm_chr3_83392113_83392843
          Length = 731

 Score =  640 bits (331), Expect = 0.0
 Identities = 331/331 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtaggcatcaaaagagggacacattagcacattacatcatcttatatgcataaatattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 agtaggcatcaaaagagggacacattagcacattacatcatcttatatgcataaatattc 311

                                                                       
Query: 61  acaatacacatttataatgcaaatactaatcaaaaatatcttaaataatgatgaaaataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 acaatacacatttataatgcaaatactaatcaaaaatatcttaaataatgatgaaaataa 251

                                                                       
Query: 121 gttttaataatttttctttagattcagaaacagtaacattgttgcgtctcatttttaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gttttaataatttttctttagattcagaaacagtaacattgttgcgtctcatttttaaaa 191

                                                                       
Query: 181 tgtcactcaaactaagccaagtattttgtgtatagagtaaattttgtaattacaaacaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 tgtcactcaaactaagccaagtattttgtgtatagagtaaattttgtaattacaaacaga 131

                                                                       
Query: 241 actgctgaattattccccatggtgctctgcatcaaggcttcaattttttaagaaaatgta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 actgctgaattattccccatggtgctctgcatcaaggcttcaattttttaagaaaatgta 71

                                          
Query: 301 accattcaagtggtgacacaaaatgacaaaa 331
           |||||||||||||||||||||||||||||||
Sbjct: 70  accattcaagtggtgacacaaaatgacaaaa 40


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)