BAC Information

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BAC

Clone NameMSMg01-081O23
Chromosome3 (Build37)
Map Location 152,140,485 - 152,140,951
singlet/doubletsinglet
Overlap geneAk5
Upstream geneEltd1, Ifi44, H28, Ptgfr, LOC100040741, LOC100040597, LOC676548, Gipc2, Dnajb4, Fubp1, Nexn, C030011O14Rik, Usp33, Zzz3
Downstream geneLOC100040705, Pigk, Rpl29-ps1, St6galnac5, LOC100040750, St6galnac3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081O23.T7 (MSMg01no081_o23.b1)MSMg01-081O23.TJ (MSMg01no081_o23.g1)
ACCAG302421AG302422
length695700
length of high quality
(start - end)
476 (68 - 543)51 (149 - 199)
definitionCHROMAT_FILE: MSMg01no081_o23.b1 PHD_FILE: MSMg01no081_o23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:17 2005CHROMAT_FILE: MSMg01no081_o23.g1 PHD_FILE: MSMg01no081_o23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATTTGCGGCGCTAAACGACTCCTATATCCAGAACGGCGCGGATTCAGAT
GAATTCCTGCAGATAAAACAGTAGCCACGCACACCTGACTTTCTTGGAGG
TTTGGTGTCAGTCTTAGTGTAACAAATATGGTCAATGCCCCCACTTGCCT
AGACTTGGAGAGTTGCAGGCAAGGTGTACAGTATGTACCATAGGGCCTGG
CCCAAGCAGGTCACCGTCTGGCAGCTGCAGTAGTGGGTAGTTACTGGTTC
CTGTGACAGCTGGTAGCCCTGAGCCACTAAGGAGGGCACAAAGTCGGGGA
TGGCACAGTGTTATGTTTGGTGGCAAGCATTCTGGATCCTGTCCTCGCAG
CATCTCTCCCCTCTTCTGTGCCTATGTAACTCTATTCCCTGCCCAGGGGC
CACTGCCCTTCTCTCTCAGGCTGTGTGGCTCTGGTGGTGTGCCGCCTGCC
CCCTACTGGCTCCTGTAGGCTGGGTCTATTAGCAGAGTCCTTGTTAAAGT
GAAGGAAGCAGCAGTGGGTCTTTTGTGGGGCACCCTGCCACCCCAAGGCA
GACTTAGTTTTCTGCGAGGTCATTGAAATGAGAGGAGAGAAGCCTGGAGC
AGAAAGAGAAATGAGCAACACAGAGAGGAACAGGCAGAGGTGGAGAGAAC
CAAAGAGGCACCGGCGGTTCCGCTCCTCACACCCGGCCGAGCCCG
GATTTGGAGGCCTGGCGGCGCCTGTTTCCCCAATTTAGGTGACCTATAGA
AGGTTTTCAGAAATCGGTTGCCTGACGGTGGATCCCATTCCCCTAGCTGG
ACTGCTTATTTGACCCCACTGGGAGAGGATTCACCTAGTCTTGGAGTGAC
TTGATGTGACAAGGTGGGTAGATACTCAGGGGGGCCTCCCCCTCCTCATA
GGAGAAGGTTACATGTGAGCATGTGAGTATGTGTGTGCACACACATATGG
ACACACACAAAGTGGGCACAAGTGAAGAGGAATAAAAAAAATACACCTAC
CTAGCCAAGGAAGGAATGTTAGACATTTTTTAAATTGGATATTAATCAGT
CTAATTTTTTATGCACCCTCTCCCCTCCTTAATTCAGACATTTGTTTTAC
TACAATGTAAACCTACCTGAATAATTCACACATTTATTTTGAGGCTTCTA
GATCGTGTGGAAGATTGACGGAAGTATTGACTTTTGACTCTAGGGCTCCC
TCGTAAAATAATATAAACAATTCTGGATTTAGGAAGGCGCCCCCATGTCA
GCAGCCCTAGCATACGCTAGTTGCGGCGTTATATAAGCTGTTGAGTGCAG
ATGTTGGCCTCTCTGTTGCAGCTCGGTGTAGGGTATGTGCAACGCGTAAA
TTATAAATTACATGCTCGCACTGATGTGTAACTAATGAGCGGGACGAGAC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_o23.b1 MSMg01no081_o23.b1 CHROMAT_FILE:
MSMg01no081_o23.b1 PHD_FILE: MSMg01no081_o23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:17 2005
         (476 letters)



>mm_chr3_152140276_152141151
          Length = 876

 Score =  835 bits (432), Expect = 0.0
 Identities = 461/476 (96%), Gaps = 9/476 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagtagccacgcacacctgactttcttggaggtttggtgtcagtcttagtgtaacaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 acagtagccacgcacacctgactttcttggaggtttggtgtcagtcttagtgtaacaaat 269

                                                                       
Query: 61  atggtcaatgcccccacttgcctagacttggagagttgcaggcaaggtgtacagtatgta 120
           |||||||         |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 270 atggtca---------cttgcctagacttggagagttgcaggcaaggtatacagtatgta 320

                                                                       
Query: 121 ccatagggcctggcccaagcaggtcaccgtctggcagctgcagtagtgggtagttactgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccatagggcctggcccaagcaggtcaccgtctggcagctgcagtagtgggtagttactgg 380

                                                                       
Query: 181 ttcctgtgacagctggtagccctgagccactaaggagggcacaaagtcggggatggcaca 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcttgtgacagctggtagccctgagccactaaggagggcacaaagtcggggatggcaca 440

                                                                       
Query: 241 gtgttatgtttggtggcaagcattctggatcctgtcctcgcagcatctctcccctcttct 300
           ||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgttatggagggtggcaagcattctggatcctgtcctcgcagcatctctcccctcttct 500

                                                                       
Query: 301 gtgcctatgtaactctattccctgcccaggggccactgcccttctctctcaggctgtgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgcctatgtaactctattccctgcccaggggccactgcccttctctctcaggctgtgtg 560

                                                                       
Query: 361 gctctggtggtgtgccgcctgccccctactggctcctgtaggctgggtctattagcagag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctctggtggtgtgccgcctgccccctactggctcctgtaggctgggtctattagcagag 620

                                                                   
Query: 421 tccttgttaaagtgaaggaagcagcagtgggtcttttgtggggcaccctgccaccc 476
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 621 tccttgttaaagtgaaggaagcagcagtgggtcttttgtggggcactctgccaccc 676


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)