BAC Information

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BAC

Clone NameMSMg01-082C21
Chromosome3 (Build37)
Map Location 17,482,648 - 17,482,849
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040034, LOC100040059, EG383936, LOC622737
Downstream geneENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5, Cyp7b1, LOC622921, LOC100040153
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082C21.T7 (MSMg01no082_c21.b1)MSMg01-082C21.TJ (MSMg01no082_c21.g1)
ACCAG302609AG302610
length676675
length of high quality
(start - end)
202 (113 - 314)453 (71 - 523)
definitionCHROMAT_FILE: MSMg01no082_c21.b1 PHD_FILE: MSMg01no082_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:35 2005CHROMAT_FILE: MSMg01no082_c21.g1 PHD_FILE: MSMg01no082_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCTGCGTGACCAACAGAGTGGCAGCCATTTTTTTTCCCAGCTCAACATCA
AAACGCCTTTCATCTGCTGTCTAAACGCAAACAAAGCAAACCTTCCGCCA
GGCCTTTCTTTCCAGATAAACTAAAACTCTCGTGTCCTGGGGCCTAAATC
AAGCCTACAGGNCTTCCCTAGATAAATCCGCTCTCAACCCGAAATCTTCT
CAACACACATGCTCCTTGTAAGATAATTTTGCAGTAGCTAATCAATAATG
CAACAGTAAATTGCATTTAAATAAACATTAGCGGCCCCTCTTAATGAGTA
AAACCTCATCTGCAATTTGTCAAAGTCGGAAATACTGGACTCTTTTGACA
TTCATTACAATATTGGAAATTGGAGCTTTGACGCGCTTTATGTACGACTC
AATTACCATCGTGTGTGCATGTATTTCTTAAAGGCCCGCTCCTATACTTT
CCTGGGATAAATAGCACAACATACCGCAAGCTTCTAGACTGAACTCCCTA
TGCCTGCCCCTACCCTGGTTAATCATATCTGGCAGACAACCCTGCTTTCC
TTTGATATTTATGACACACATCCACTGTACCCCGCCCCGTCTTACACTCC
CTGACTGCATACCACTTTTTCACCCC
ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATTGCTTTTAATAGCTGACTAATGACGTTG
AACATTTCTTTAGATGCTTCTCAGCCATTTGGTATTCCTCAATTGAGAAT
TCTTTGTTTAGCTCTGTACCCCATTTTTAATAGGGTTATTTTGTTCTCTG
GAATCTAACTTGTTGAGTTCTTTTTATATATTGGATATTAGCCCTCTATT
GAATATAGGGTTGATAAAGATCTTTATCCAATTTGTTGGTCGCTGTTTTG
TCCTATTGACAAACTCCTTTGCCTTACAGACGCTTTGCAATTTTATGAGA
TCTTCATTTATCAATTCTTGATCTTAGAGAATAAGCTATTGGTTTTCTGT
TCAGGAAAATTTTCCCTGTGTTCATGTATTCAAGGCTTTTCCCCATTTTC
TTTTCAATTAGTTCCAATGTATCTGTTTTTATGTGAAGGTCCTTGATCCA
CTTGGACTTGAGCTTTGTACATTGAGATATAAATGGATTGATTTACATTC
TTCTACATACTGACCTCCAGTATAACCAGCACCATTTGGTGAAAATGCTG
CCTTATTTCCACTGGGTAGTTTTAGTTCTTTGTTAAAAGATCTAGTGACC
ATATGTGTATGGTGTTTATTTCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_c21.b1 MSMg01no082_c21.b1 CHROMAT_FILE:
MSMg01no082_c21.b1 PHD_FILE: MSMg01no082_c21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:35 2005
         (202 letters)



>mm_chr3_17482448_17483049
          Length = 602

 Score =  369 bits (191), Expect = e-107
 Identities = 199/202 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgctgtctaaacgcaaacaaagcaaaccttccgccaggcctttctttccagataaact 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 tctgctgtctaaacgcaaacaaagcaaaccttccgccaggcctttctttccagataaatt 260

                                                                       
Query: 61  aaaactctcgtgtcctggggcctaaatcaagcctacaggncttccctagataaatccgct 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 aaaactctcgtgtcctggggcctaaatcaagcctacaggccttccctagataaatccgct 320

                                                                       
Query: 121 ctcaacccgaaatcttctcaacacacatgctccttgtaagataattttgcagtagctaat 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 ctcaacccgaaatcttctcaacacacgtgctccttgtaagataattttgcagtagctaat 380

                                 
Query: 181 caataatgcaacagtaaattgc 202
           ||||||||||||||||||||||
Sbjct: 381 caataatgcaacagtaaattgc 402


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 602
Length adjustment: 8
Effective length of query: 194
Effective length of database: 594
Effective search space:   115236
Effective search space used:   115236
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)