BAC Information

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BAC

Clone NameMSMg01-082H14
Chromosome3 (Build37)
Map Location 20,844,677 - 20,845,207
singlet/doubletsinglet
Overlap genenone
Upstream geneCp, Hps3, Hltf, Gyg, Cpa3, EG664965, LOC100040283, Cpb1, Agtr1b
Downstream geneEG665094, LOC100040325, 7530428D23Rik, LOC100039465
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082H14.T7 (MSMg01no082_h14.b1)MSMg01-082H14.TJ (MSMg01no082_h14.g1)
ACCAG302833AG302834
length685676
length of high quality
(start - end)
540 (68 - 607)531 (66 - 596)
definitionCHROMAT_FILE: MSMg01no082_h14.b1 PHD_FILE: MSMg01no082_h14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:56 2005CHROMAT_FILE: MSMg01no082_h14.g1 PHD_FILE: MSMg01no082_h14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAAGGTCCCTACCTAAACATGATAAAAGCAATCTACAGCAAACCA
GTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAA
ATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAG
TACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGG
ATACAAATTGGAAAAGAGGAACTCAAAATATCACTTTTTGCAGATGATAT
GATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAAACC
TGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAG
TCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAATTAG
GGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTTGGCG
TGACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAATCT
CTGAAGAAAGAAATTAAGGAAGATCTCAGAAGATGGAAAGATCTCCCATG
CTCATGGAATGGCAGGATCAACATTGGAAAAATGGCTATCTTGCCAAAAG
CAATCTACAGATTCAATGCAATCCCCATCAAAATT
CAATGAAGTGGTAGGCCTGGCGGCGCCTTTCAAAGAATTTAGGTGAACTA
TAGTTTACCCACAAAATTCTTTTTGTAACAACATGTCTGAAGAAATAATA
GTAATAGCTGATCAAAGAAAATACTTGAAATCAATATCTAGTCTCCACAT
GTAGACATGTACAATGATGACCACACACATAGACATACACAAATATAAAC
ACATCGATATGAACAAACACATGTATGCGTGTATGCAAGCACAAATCCAT
CCATCAAACACACAAATATTAATTTAATTGGTACTTATGATACTCTTACC
ACATTATTTGTTCATAAATTCTCATAAAGAATGAATCATATCCACCGTCA
TTTCTGAGGCATAGTATACATCACAGACACATAACTCATATTACAGTAGG
TATGAGATTGATCCTTTCCTTTCCTTTCCTTTCCTTACAAATTGGCTGTT
GGGAATTTATTTCTTACTCAGAGTAACTAATGACATGAATTACAATAAAT
TTGTTTCATAATTGTGTGGATCTCACACAATTCTTGATTCTGGCATTAAT
TTTTAAACCATTTTTTATGAGATATTTTCTTCTTTAACATTTCAAATGCT
ATCCCAAAAGTCCCCTATACCCTACCCCCACCTTGCTACCCTACCCACCC
ACTCCTGCTTCCTGTACTGCATTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_h14.g1 MSMg01no082_h14.g1 CHROMAT_FILE:
MSMg01no082_h14.g1 PHD_FILE: MSMg01no082_h14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:56 2005
         (531 letters)



>mm_chr3_20844662_20845592
          Length = 931

 Score = 1011 bits (523), Expect = 0.0
 Identities = 529/531 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctttttgtaacaacatgtctgaagaaataatagtaatagctgatcaaagaaaatact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 attctttttgtaacaacatgtctgaagaaataatagtaatagctgatcaaagaaaatact 487

                                                                       
Query: 61  tgaaatcaatatctagtctccacatgtagacatgtacaatgatgaccacacacatagaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tgaaatcaatatctagtctccacatgtagacatgtacaatgatgaccacacacatagaca 427

                                                                       
Query: 121 tacacaaatataaacacatcgatatgaacaaacacatgtatgcgtgtatgcaagcacaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tacacaaatataaacacatcgatatgaacaaacacatgtatgcgtgtatgcaagcacaaa 367

                                                                       
Query: 181 tccatccatcaaacacacaaatattaatttaattggtacttatgatactcttaccacatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tccatccatcaaacacacaaatattaatttaattggtacttatgatactcttaccacatt 307

                                                                       
Query: 241 atttgttcataaattctcataaagaatgaatcatatccaccgtcatttctgaggcatagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 atttgttcataaattctcataaagaatgaatcatatccaccgtcatttctgaggcatagt 247

                                                                       
Query: 301 atacatcacagacacataactcatattacagtaggtatgagattgatcctttcctttcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 atacatcacagacacataactcatattacagtaggtatgagattgatcctttcctttcct 187

                                                                       
Query: 361 ttcctttccttacaaattggctgttgggaatttatttcttactcagagtaactaatgaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ttcctttccttacaaattggctgttgggaatttatttcttactcagagtaactaatgaca 127

                                                                       
Query: 421 tgaattacaataaatttgtttcataattgtgtggatctcacacaattcttgattctggca 480
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 126 tgaattacaataaatttgtttcataattgtgtggatgtcacacaattcttgattctggca 67

                                                              
Query: 481 ttaatttttaaaccattttttatgagatattttcttctttaacatttcaaa 531
           ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 66  ttaatttttaaacaattttttatgagatattttcttctttaacatttcaaa 16


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)