ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAGAATATTTTCAAGGAAGCTTAATTAAATTTATCTTCTATTATGCATTT
TAATTAAAAATAACAATAAGAATTAAAATGATTGATTTTTCTGGCATTAA
AAAAAAAGTAGACCAAAGCAGAAAGAAAACATGGCTGAGGATCTTATGAG
GCTTCTGGCTTGTCTTGAGTGTCTCCTCAAAATTCTGTACAAATAAGCTG
GCTTTAATTAAGTCCTGGTCCTCTAGAGTGTGTGCCTCTTCAAAATTCTG
TACCTAAACTAGGTTAAAGTATTGATCCTCTAGACGCCTCTATTCAGAGA
CCTACCTGGAAAAGTAAGTCACATGGCTGCTCCCACCTTGATGAGGTCGA
TGTGCAATCAAGTGACAGAACTAGGAATTAGAAACAAACAAACATGCAAA
CACAAAAACTAGCCAGAAGAGAGTACCACAGAGGTGCATACCTACACACA
CCCACACACACACACACACACACACACCCACACTACCCATTCACACACAC
CCTACACTCACTCGCATAACTTGAATTTGAACTAAAGGGTCCATCACAGT
ACCCTGCCACTGAAAACTAAAAATAAGACAGGCCCAAAAACAACCCCTGC
ACCCACCCCCCTCCCCACCCAAACCCAGAACACCACAATCCTCAACCTA

GATGTGTGAGGCCTGGCGGCCGCCTTTCAAAAAATTTAGGTGACCTATAG
ATTTCCACGAGGAATTCCAAAATTTCTACAGGCTTTCCTAATTTTTTCAC
AGTAACCAAGGTCAGAAGTTGAACCCATCAGCACTACCACATGCACTGAC
TGTCTGGCATGAGAAGCAATACCACTTATTTTGCAACCCACTCAAATTTT
TTCTTTACCATCTAGAGTCCTTCCAGAGTTAATTCTTTTAGATCATGACT
CCAGGAGTCATTATCAATGACATTAGCAAGAACAAATCTCTTTGATGGCT
ATATCAATGTCATATTCAATCTTCCTATCAACCAGCATACAGTTAGTTCT
GGGGCAGCCAGGATTTCTCCAGGATTCCAAATATAGCTTGTGTGGCATGA
CTCATGAGGTCCACTTCAGTCAGCCCTAGAATAAATCCAGCAAAACACAG
TTTTGCAGTGATGACTTGCTCCTCAGACCATGGTGGATCATTATTGGCAT
CATTCTTGAAGAACATCTCCACTTTTGGTGGATAAAACTTATACCCTTCT
ATTACACCAGAGTTCCTTTTGACAAAAGATGCCATTGCTATTCTTCGGCC
CCATTCAACTGAATTCATTTCACACTGGAATGCAATGAAAGCAGTCTCCC
CTAAGTTTTTCATGAAAGCAGTTTTTATACCAGC

Query= MSMg01no082_k19.b1 MSMg01no082_k19.b1 CHROMAT_FILE:
MSMg01no082_k19.b1 PHD_FILE: MSMg01no082_k19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:12 2005
         (343 letters)



>mm_chr3_15974470_15975212
          Length = 743

 Score =  648 bits (335), Expect = 0.0
 Identities = 341/343 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaagcttaattaaatttatcttctattatgcattttaattaaaaataacaataagaatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 gaagcttaattaaatttatcttctattatgcattttaattaaaaataacaataagaatta 484

                                                                       
Query: 61  aaatgattgatttttctggcattaaaaaaaaagtagaccaaagcagaaagaaaacatggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 aaatgattgatttttctggcattaaaaaaaaagtagaccaaagcagaaagaaaacatggc 424

                                                                       
Query: 121 tgaggatcttatgaggcttctggcttgtcttgagtgtctcctcaaaattctgtacaaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tgaggatcttatgaggcttctggcttgtcttgagtgtctcctcaaaattctgtacaaata 364

                                                                       
Query: 181 agctggctttaattaagtcctggtcctctagagtgtgtgcctcttcaaaattctgtacct 240
           |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 agctgggtttaattaagttctggtcctctagagtgtgtgcctcttcaaaattctgtacct 304

                                                                       
Query: 241 aaactaggttaaagtattgatcctctagacgcctctattcagagacctacctggaaaagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aaactaggttaaagtattgatcctctagacgcctctattcagagacctacctggaaaagt 244

                                                      
Query: 301 aagtcacatggctgctcccaccttgatgaggtcgatgtgcaat 343
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 aagtcacatggctgctcccaccttgatgaggtcgatgtgcaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no082_k19.g1 MSMg01no082_k19.g1 CHROMAT_FILE:
MSMg01no082_k19.g1 PHD_FILE: MSMg01no082_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:12 2005
         (541 letters)



>mm_chr3_15841815_15842755
          Length = 941

 Score =  953 bits (493), Expect = 0.0
 Identities = 529/541 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattccaaaatttctacaggctttcctaattttttcacagtaaccaaggtcagaagttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattccaaaatttctacaggctttcctaattttttcacagtaaccaaggtcagaagttga 260

                                                                       
Query: 61  acccatcagcactaccacatgcactgactgtctggcatgagaagcaataccacttatttt 120
           |||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 acccatcagcactaccacctccactgactgtctggcatgagaagcaataccacttgtttt 320

                                                                       
Query: 121 gcaacccactcaaattttttctttaccatctagagtccttccagagttaattcttttaga 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 acaacccactcaaattttttctttaccatctagagtccttccagagttaattctttaaga 380

                                                                       
Query: 181 tcatgactccaggagtcattatcaatgacattagcaagaacaaatctctttgatggctat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcatgactccaggagtcattatcaatgacattagcaagaacaaatctctttgatggctat 440

                                                                       
Query: 241 atcaatgtcatattcaatcttcctatcaaccagcatacagttagttctggggcagccagg 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcaatgtcaaattcaatcttcctatcaaccagcatacagttagttctggggcagccagg 500

                                                                       
Query: 301 atttctccaggattccaaatatagcttgtgtggcatgactcatgaggtccacttcagtca 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 atttctccaggattccaaatatagcttgtgtggcatgactcatgatgtccacttcagtca 560

                                                                       
Query: 361 gccctagaataaatccagcaaaacacagttttgcagtgatgacttgctcctcagaccatg 420
           |||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 561 gccctagaataagtccagcaaaacacagttttgcagtgatggcttgcttctcagaccatg 620

                                                                       
Query: 421 gtggatcattattggcatcattcttgaagaacatctccacttttggtggataaaacttat 480
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 621 gtggatcattattggcatcattcttgaagaacatctacacttttggtggataaaacttat 680

                                                                       
Query: 481 acccttctattacaccagagttccttttgacaaaagatgccattgctattcttcggcccc 540
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acccttccattacaccagagttccttttgacaaaagatgccattgctattcttcggcccc 740

            
Query: 541 a 541
           |
Sbjct: 741 a 741


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)