BAC Information

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BAC

Clone NameMSMg01-082L05
Chromosome3 (Build37)
Map Location 91,863,696 - 91,863,972
singlet/doubletsinglet
Overlap genenone
Upstream gene4930529C04Rik, 9130204L05Rik, LOC100042463, Pglyrp3, EG619750
Downstream geneLor, A030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082L05.T7 (MSMg01no082_l05.b1)MSMg01-082L05.TJ (MSMg01no082_l05.g1)
ACCAG303007AG303008
length720711
length of high quality
(start - end)
371 (42 - 412)274 (71 - 344)
definitionCHROMAT_FILE: MSMg01no082_l05.b1 PHD_FILE: MSMg01no082_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:14 2005CHROMAT_FILE: MSMg01no082_l05.g1 PHD_FILE: MSMg01no082_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGAGCCGCGGAATT
CAGAGAGTTGTTCAGAAGTGAATTTCCAAATTTTCACAGGGTAGGTCTTC
TTCCTGTATATGGTGTTTATGTCTACAACAAAGAGAAAGTTCAAACTCTT
TCCATTCAGGGTGACTTTGGTGGTCGTATTTAGCTATTGATACTTAGGAA
TCTGCTGCTGGATTGTAATGTGAGATCCCATGTTCTAGACCTTAGGTATA
GAGTTATTCACCTGTGACAGAGAGGAACAAATTGAAAAACACAGTTATAT
TCAGTGCCCTATTTGCCTGGAGGATATATTGGGTCTGATTTTCTTGTGTG
TGTGCGGCTTTTTGTTTTTGTATTTGTTTTTTGTTTGCTTGATCATCCAT
TGTTGATCAATCAAAGCTGATTGGCAATGGCAAAAGAGACGTACTTTTCA
CTCTAACGTGGGAACAGTTGAGCTACTTCCATGTTCCCATAAAATGACAC
TTCCTAAGATGGTGATTGACTGAGGCATAAAGGAATATCATGCTACATCA
GGCGCATTGTGATAGTCCTTAGGCCCTTCTTCTTTCTATAGATCTAGGCT
ACAAATTTCTAGCATTAGGCACATTTTGGACACCACCTTTCTTTTGACAC
TTTACCACTTCCCCATTTCTTTATCCCAATTTATACGACATATATATTGT
TCTTCGTAGTTACAATTTCG
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTCAGATCCCCAAACTTGAAACCCCTGAGA
AGCACTGGACATTGAATAGGGAAGGGAGGTCTGAAAGAATAGATGCTACT
CTTCAAGTCAGATCAGTAATAGGAAGGGAGAAGTCCATGATTCAGCATGT
ATACAGTACAGAAAATAATTATGGAATACTTTGCATCTGAACTGTTTGAA
TTGAGGAGGATTTTTAAACAATAAATGAGAGAGCTTCTCACAACCTGATT
GATGAAGCTGTGAGACAAGGAGGTAGAATGGTTTTGTTGCGAAAGCAGAG
AAACAGTAATGTAACTACTCATTCTTCTTTGATATAAAGGCTACATGATC
TTTTTATAGCCTCCGATCTGTGTCCCAGGGAAACATGAAGCATTCATAAT
CATGTGCTTAAGGGCATAGATCTGGACAAGAGATATGTGGTTAGAAATTG
AGTAAAGTCTATTAAGAAGGAGGGAAACAAACAAACAAACAAACATTAAC
TACTACCTATAAATCCCCTAATAACCCCTGAATGCTATCCAGATCTGCAC
AGATAATTACTCTTTTTGAAAAACAAGTCATCCCTGCATACTGGAATATG
ATTTGAGTAATAGCGCGCTTACTATCTGATTTGTAGGTGTCTAAACCTTC
CTTATTTCGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_l05.g1 MSMg01no082_l05.g1 CHROMAT_FILE:
MSMg01no082_l05.g1 PHD_FILE: MSMg01no082_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:14 2005
         (274 letters)



>mm_chr3_91863496_91864172
          Length = 677

 Score =  505 bits (261), Expect = e-147
 Identities = 272/277 (98%), Gaps = 3/277 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcagatccccaaacttgaaacccctgagaagcactggacattgaatagggaagggaggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ttcagatccccaaacttgaaacccctgagaagcactggacattgaatagggaagggaggt 418

                                                                       
Query: 61  ctgaaagaatagatgctactcttcaagtcagatcagtaataggaagggagaagtccatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ctgaaagaatagatgctactcttcaagtcagatcagtaataggaagggagaagtccatga 358

                                                                       
Query: 121 ttcagcatgtatacagtacagaaaat---aattatggaatactttgcatctgaactgttt 177
           ||||||||||||||||||||||||||   ||||||||||||| |||||||||||||||||
Sbjct: 357 ttcagcatgtatacagtacagaaaattataattatggaataccttgcatctgaactgttt 298

                                                                       
Query: 178 gaattgaggaggatttttaaacaataaatgagagagcttctcacaacctgattgatgaag 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 gaattgaggaggatttttaaacaataaatgagagagcttctcacaacctgattgatgaag 238

                                                
Query: 238 ctgtgagacaaggaggtagaatggttttgttgcgaaa 274
           |||||||||||||||||||||||||||||||| ||||
Sbjct: 237 ctgtgagacaaggaggtagaatggttttgttgtgaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 677
Length adjustment: 9
Effective length of query: 265
Effective length of database: 668
Effective search space:   177020
Effective search space used:   177020
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)