Query= MSMg01no082_p24.b1 MSMg01no082_p24.b1 CHROMAT_FILE:
MSMg01no082_p24.b1 PHD_FILE: MSMg01no082_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:36 2005
(501 letters)
>mm_chr3_139309196_139310096
Length = 901
Score = 841 bits (435), Expect = 0.0
Identities = 486/509 (95%), Gaps = 14/509 (2%)
Strand = Plus / Plus
Query: 4 ggaattcaaggcccctctcggaccactgagtggagtctaaatattggggccattttagat 63
|||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||
Sbjct: 196 ggaattcaaggcccct-tcagaccacggagtggagtctaaatattggggccattttagat 254
Query: 64 tattgatacactctctagttcacagagaaatgacagtacaagaaacaattagttcattat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tattgatacactctctagttcacagagaaatgacagtacaagaaacaattagttcattat 314
Query: 124 atagtgactgctataaatttcatttcctcttaaatcccatgtttctaagattagggtttt 183
||||| |||||||||||||||||||||| |||| ||||||||||| ||||||||||||||
Sbjct: 315 atagtaactgctataaatttcatttcctattaagtcccatgtttccaagattagggtttt 374
Query: 184 tgttgttgtt---ttgtttttttgttgttttgtttgtattttcccctagatgtaggttct 240
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 375 tgttgttgttgttttgtttttt-gttgttttgtttgtattttcccctagatgtaggttct 433
Query: 241 ggactaattggacagcctgaatttttctgggtatcaagctgtttgccagacttaaaatcc 300
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ggactaactggacagcctgcatttttctgggtatcaagctgtttgccagacttaaaatcc 493
Query: 301 ttgcctgacatga--------cctagggcatgtttaacttcatgttataacttaaaaacg 352
|||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ttgcctgaca-gaatttactacctagggcatgtttaacttcatgttataacttaaaaacg 552
Query: 353 gttgaaatagggattagtaacttgtcttttttatttttgttgttgcatatatattttata 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 gttgaaatagggattagtaacttgtcttttttatttttgttgttgcatatatattttata 612
Query: 413 gcctttgatgtactgggaaatgtagaatgcattgctaattttctgcttttataatattct 472
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 613 gcctttgatgtactgggaaatgtagaatgcattgttaattttctgcttttataatattct 672
Query: 473 cgctatttagaaattgccctctcttcatg 501
|||||||||||||||||||||||||||||
Sbjct: 673 cgctatttagaaattgccctctcttcatg 701
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space: 437481
Effective search space used: 437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no082_p24.g1 MSMg01no082_p24.g1 CHROMAT_FILE:
MSMg01no082_p24.g1 PHD_FILE: MSMg01no082_p24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:36 2005
(594 letters)
>mm_chr3_139384747_139385740
Length = 994
Score = 1102 bits (570), Expect = 0.0
Identities = 588/594 (98%)
Strand = Plus / Minus
Query: 1 agagggtgcagcagaggccggaggtgccacaggctgtctgttaaccaccagaaggaagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 agagggtgcagcagaggccggaggtgccacaggctgtctgttaaccaccagaaggaagcc 735
Query: 61 agtagagtagcaatggccatggttacttcttataaccctcagggcaaagagaagtcagtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 agtagagtagcaatggccatggttacttcttataaccctcagggcaaagagaagtcagtt 675
Query: 121 ttcttgtctacaaaactccaaggcaaaatgcttctattcttgagaacagctctaacaaga 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 674 ttcttgtctacaaaactccaaggcaaaatgcttctattcttgagaacagctctagcaaga 615
Query: 181 aagctcaattaatgatcagcttaaaatataggttttaaagcgtaaataatgtaaagtatt 240
|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||
Sbjct: 614 aagctcaattaatgatcagcttgaaatataggttttaaagtgtaaataatgtaaagcatt 555
Query: 241 gtacacagaaacagtttgcatacaagaatagctcataacattgtcattgaaggggtcact 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 554 gtacacagaaacagtttgcatacaagaatagctcataacgttgtcattgaaggagtcact 495
Query: 301 gggtcaactcagtgcacttcctctggattttttacttcttcagtgtttctccctgattct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gggtcaactcagtgcacttcctctggattttttacttcttcagtgtttctccctgattct 435
Query: 361 aacctaaccttggattccagggagatggatcaggctaataaacatcttacaacaggagaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 aacctaaccttggattccagggagatggatcaggctaataaacatcttacaacaggagaa 375
Query: 421 agataaccactaaggtccacagagccctgtgggatacctcaaccccaaaattagaatatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 agataaccactaaggtccacagagccctgtgggatacctcaaccccaaaattagaatatt 315
Query: 481 tgtgtatgatggtgagctgcaccctggagcaggagcagttgtttcagtggaatcatatta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tgtgtatgatggtgagctgcaccctggagcaggagcagttgtttcagtggaatcatatta 255
Query: 541 tcccccacccctgcagaggccatgagcactttttgagaggccctgcagcatcag 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tcccccacccctgcagaggccatgagcactttttgagaggccctgcagcatcag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space: 574656
Effective search space used: 574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
