BAC Information

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BAC

Clone NameMSMg01-083E04
Chromosome3 (Build37)
Map Location 63,952,022 - 63,952,576
singlet/doubletsinglet
Overlap gene4930518C23Rik
Upstream geneLOC666967, Mme, Plch1, LOC100040836, E130311K13Rik, Slc33a1, Gmps, LOC670032, EG56544
Downstream geneLOC380739, EG637004, EG667031, EG637053, LOC672951, EG639869, EG667060, EG667069, LOC100040918, 4933425M15Rik, LOC670110, Kcnab1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083E04.T7 (MSMg01no083_e04.b1)MSMg01-083E04.TJ (MSMg01no083_e04.g1)
ACCAG303433AG303434
length711706
length of high quality
(start - end)
559 (41 - 599)550 (70 - 619)
definitionCHROMAT_FILE: MSMg01no083_e04.b1 PHD_FILE: MSMg01no083_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:56 2005CHROMAT_FILE: MSMg01no083_e04.g1 PHD_FILE: MSMg01no083_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AAAAGGCTCAACAATAGTAAGGTTTTTTTTTTTTTTTAGTGGCAAACAGT
AAGGCAATGATGAATGGCACACAAACTAAAATGCCAATATAGGTCTGAAA
AAAAATCCCGGAAATTCTAAAGTAGGGGATAATTATAAATGTCTCAAGGA
AACAGTTAGTGATCAAACTCTCTTTTAGCTTTTTCTTTCCTTTCTGTTTT
TCCCCCTTTGGTTTGATTTCGTTTTATCTTTGAGATAGAGAAACTCCTGT
AGCCCTGGATGTCCAGGAATTTACTCTATGGCTCAGGCTGGCATTGAACT
CTCATTCCCCCACCCCCCCTCTCTCTCTCTCTCTCTCTGTACAGGGTTAC
AGTGTACAAAACCACAGAGATCCTCCCACTTATGCCTTCTAAGTGTTGGA
AACAAAGGTGACTGATCTTTTTCTTAAAAAGTATGTATGAAAATGACCTG
TAGGCTATTGCCACATTAGTAAAGTACATATGGAAATACTTTAAAACTAT
TTTTAAATGTTTAGCAATTACCAAGGATATATTATTTTTATAGAAATAAG
TAAGAAATGGCCATGAAAGAACCTAAGTAATGATACATCATACAGACAGG
CTTGGGTGATGCAACAATCCTAGGGGAACGACTTTTTTCCTAATTCTCTG
CACCCAATGCT
TAATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATCTGATATACAGTTACCAAACCCAGACACT
ATTGAGAATGCCAAGAAGTGCATGTTGAAAGGAGCTTGATATGGCTGTCC
ACTGAGAATTGCTGACAGAGCCTTACAAATGCAGAGACTGGCTCTATAAG
TAACCTCTCCCTACTGTTGGACATTTTATCTAAGCCCCTTCCTTTTAAGT
CACCTCCCAAGTCTCTGATGCATTCTGAGGCGTCCCACCACCAACTTCCT
ATTTCCTGAAGTGGCCTTTTACATTCTCTCTGCTGGTTCTCAGGGTTTCC
TTTTCCCTCACACAATACCAGATCACGACCCCTTTCCCCACTGTGCCTCT
CCACACCCTGGCCACTTCTGCTCCCAGGTCCCTCCCTTCCTATCTAGGAT
TGCTTTCCTCGCCTTTCAAGTGAGACTGAAGTGTCTTCACTTAGACACTT
CAGCTTGTGGAGTTTTATGAGTTCTGTGGACTGTATCTTGGGTATTCTGT
ACTTTTATTTGGGCTACTACCCACTTATTAGTGAGTACATACAATGCATG
TCCTTTGGGTTTGAGTTACCTCACTCCCGATGATATTTTTCACTTCCATT
CATTTGCCTGNAAAACTCAGGATGCCCTCATCCTTAATAATTGAGCATTA
TTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_e04.b1 MSMg01no083_e04.b1 CHROMAT_FILE:
MSMg01no083_e04.b1 PHD_FILE: MSMg01no083_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:56 2005
         (559 letters)



>mm_chr3_63951818_63952776
          Length = 959

 Score = 1065 bits (551), Expect = 0.0
 Identities = 554/555 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaaaggctcaacaatagtaaggtttttttttttttttagtggcaaacagtaagg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaaaggctcaacaatagtaaggtttttttttttttttagtggcaaacagtaagg 264

                                                                       
Query: 65  caatgatgaatggcacacaaactaaaatgccaatataggtctgaaaaaaaatcccggaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caatgatgaatggcacacaaactaaaatgccaatataggtctgaaaaaaaatcccggaaa 324

                                                                       
Query: 125 ttctaaagtaggggataattataaatgtctcaaggaaacagttagtgatcaaactctctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttctaaagtaggggataattataaatgtctcaaggaaacagttagtgatcaaactctctt 384

                                                                       
Query: 185 ttagctttttctttcctttctgtttttccccctttggtttgatttcgttttatctttgag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttagctttttctttcctttctgtttttccccctttggtttgatttcgttttatctttgag 444

                                                                       
Query: 245 atagagaaactcctgtagccctggatgtccaggaatttactctatggctcaggctggcat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atagagaaactcctgtagccctggatgtccaggaatttactctatggctcaggctggcat 504

                                                                       
Query: 305 tgaactctcattcccccaccccccctctctctctctctctctctgtacagggttacagtg 364
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 505 tgaactctcattcccccaccccccccctctctctctctctctctgtacagggttacagtg 564

                                                                       
Query: 365 tacaaaaccacagagatcctcccacttatgccttctaagtgttggaaacaaaggtgactg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tacaaaaccacagagatcctcccacttatgccttctaagtgttggaaacaaaggtgactg 624

                                                                       
Query: 425 atctttttcttaaaaagtatgtatgaaaatgacctgtaggctattgccacattagtaaag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atctttttcttaaaaagtatgtatgaaaatgacctgtaggctattgccacattagtaaag 684

                                                                       
Query: 485 tacatatggaaatactttaaaactatttttaaatgtttagcaattaccaaggatatatta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tacatatggaaatactttaaaactatttttaaatgtttagcaattaccaaggatatatta 744

                          
Query: 545 tttttatagaaataa 559
           |||||||||||||||
Sbjct: 745 tttttatagaaataa 759


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)