BAC Information

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BAC

Clone NameMSMg01-083E24
Chromosome3 (Build37)
Map Location 152,812,589 - 152,812,926
singlet/doubletsinglet
Overlap genenone
Upstream geneGipc2, Dnajb4, Fubp1, Nexn, C030011O14Rik, Usp33, Zzz3, Ak5, LOC100040705, Pigk, Rpl29-ps1, St6galnac5
Downstream geneLOC100040750, St6galnac3, EG545578, Asb17, Msh4, Rabggtb, Acadm, Slc44a5, LOC100040980
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083E24.T7 (MSMg01no083_e24.b1)MSMg01-083E24.TJ (MSMg01no083_e24.g1)
ACCAG303472AG303473
length703705
length of high quality
(start - end)
452 (43 - 494)516 (70 - 585)
definitionCHROMAT_FILE: MSMg01no083_e24.b1 PHD_FILE: MSMg01no083_e24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:00 2005CHROMAT_FILE: MSMg01no083_e24.g1 PHD_FILE: MSMg01no083_e24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCCTGTTTAGCTCTGTATCCATTTTTAAATTGTGTTATTTGGTTTGTTG
ATGTCTAATTCCTTGAGTACTTTATATATTTTGGATATTAGCCTTCTGTT
AGATGTAGGTTGGTGACAATCCTTTCCTAGTCTGTAGGCAGCCATATAGT
CCTATTGGCAGTGTCCTTTGCCTTACCGAAGCTTTCCAGTTTCATGAGGT
CCCATTTATCAGTTGTTGATCTTGGAGCCAGAGCTGTTGATGTTCTGTTA
GGAAGTCGTCTCCTGTACCAATGCATTCAAGTCTATTCCCCATCTTCTCT
TCTATAAGATTTAGGGCATTAGGGTTTATGATGAGGTCTTTGGTCCACTT
GGACTTGAGTTTTGTGTAGGGTGATAAATATGGATCTATTTGCATTCTTC
TACACTCAGACATCCAGTAAGACCAGCACCATTTGCTGCAAGTCAGAGGG
GTCAAGAACACTACAAGAAGACCTACAGTTTCAACTAATATGGGCCCATA
GGAGCTCACAGAGCTTGGGCTACCAAGCAGGGAGCATGCAGGAGCTGCAC
TTATATCCCCTTCACAGTTGTTGCAAATGTGCTGCTCAGTCCTCATGTGG
GTCCCCTAACAACTGGACAGCATGAGCTGTCTCGGTCTCCATTGCCTACC
ATT
GAATGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACCCAGGGATCTAGTCCAGGGCATGGTGACA
GCAATGGTGCTTAGAATCATGAAGTACAGTCTTCTCACACGGTAAGATAT
CCATAACCAAACTCAGTGTGGCCCTTCTTCAGTACATACATACATGTTAT
AAACGGCTGTCTTAGTCAGGGTTTCTATTCCTGCACAAACATCATGACTA
AGAAGCAAGTTGGGGAGGAAATGGTTTATTCGGCTTACACTTCCATACTG
CTGTTCATCACCAAGGAAGTCAGGACTGGAACTCAAGCAGGTCAGGAAGC
AGGAGCTGATGCAGAAGCCATGGAGGGATGTTCCTTACTGGCTTGCTTCC
CCTGGCTTGCTCAGCCTGCTCTCTTATAGAACCCAAGACTACCAGCACAG
GGATGGTCCCACCCACAAGGGGCCTTTCCCCCTTGATTCCTAATTGAGAA
AATGCCTTACAGCTGGATCTCATAGAGGCATTTCCCCAACTGAAGCTCCT
TTCTCTGTGATAACTCCAGCTTGTGTCAAGTTGACACTAAACTAGCCAGT
ACAATGGCAAATATGCTTCATTTGTTAGTCCAAAAATAGGTCCTGAGAGA
GACTAGATTCTCAGAAAGAAAAAGACAATATATCCTAACAGAACAGTAAA
AATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_e24.g1 MSMg01no083_e24.g1 CHROMAT_FILE:
MSMg01no083_e24.g1 PHD_FILE: MSMg01no083_e24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:00 2005
         (516 letters)



>mm_chr3_152812589_152813504
          Length = 916

 Score =  594 bits (307), Expect = e-174
 Identities = 331/339 (97%), Gaps = 3/339 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   cccagggatctagtccagggcatggtgacagcaatggtgcttagaatcatgaagtacagt 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 cccagggatctagtccagggcatggtgacagcaatggtgcttagaatcatgaagtacagt 279

                                                                       
Query: 62  cttctcacacggtaagatatccataaccaaactcagtgtggcccttcttcagtacataca 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 cttctcacacggtaagatatccataaccaaactcagtgtggcccttcttcagtacataca 219

                                                                       
Query: 122 tacatgttataaacggctgtcttagtcagggtttctattcctgcacaaacatcatgacta 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 tacatgttataaacggctgtcttagtcagggtttctattcctgcacaaacatcatgacta 159

                                                                       
Query: 182 agaagcaagttggggaggaaatggtttattcggcttacacttccatactgctgttcatca 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 agaagcaagttggggaggaaatggtttattcggcttacacttccatactgctgttcatca 99

                                                                       
Query: 242 cc-aaggaagtcaggactggaactcaagcaggtcagga-agcaggagctgatgcagaagc 299
           || |||||||||||||||||||||||||||| | | || |||||||||||||||||| ||
Sbjct: 98  ccaaaggaagtcaggactggaactcaagcagatga-gagagcaggagctgatgcagaggc 40

                                                  
Query: 300 catggagggatgttccttactggcttgcttcccctggct 338
           |||||||||||| || |||||||||||||||||||||||
Sbjct: 39  catggagggatgctctttactggcttgcttcccctggct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)