ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTTTGGCACTGGAAGCTGCCAATGGGTCTATCCTGAACTATATTGTGCC
TGTCTCCTCTCTCCTCCTGCCTCGCTGAAAGCCTGTGCCTTACTTGTGTT
CTCCTTTTCCTCTCTGGGATCTGGAAAATCCACCTCCATATCTTCACCCA
TTGATTAGCTTCTGTCGATAAATAAAGATTTATTTAGCCAGTCAAACAAT
TAGGGAAACTCTCCCTATAGATCCCTTTAGGAGTATCTTGACATAGTGGT
CTTAGTTGTGGTTTATAAGCTTTACAGCTAGGTAGGACTGTTGATTGACA
ACCTCTTTGGTACCCTGAAAGCTGGTATTCAGGGATGAGGTTTTCAGGAC
AGATCCAGCTTGAGTTTTCTGAGTCCTGTGTCTGTTGTAACTACAGCCGT
GGGGAGTCAACCAATGGCAACAGACATGGCCTATACTGTTCTGTGAGGCC
ACTGGATTTCCCTGACCAGCAAAATGCAGTTCCTCATCCTTGGTGCTGGG
ACTATTGTTAGATGTTCTGTGTCCCTTGCTGAGAACATTGTCAGTCCAAA
TATCTTACTTTAACTTGAACGCTACCTATAAATTGCTGTATTGACAAGGA
TTGTAGACAGCGGTATGAACATTTTTGATTCCCCGATCACGTCACACATT
TTCT

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCCCTGTACTGGAGCATATAAAGTTTGCAAG
ACCAATGATGGCCGACTATGTCATCTTCTGCTACATATGCAGCTAGAGAC
GCGAGCTCTGGGAGGTACTGGTTAGTTCATATTGTTGTTCCTCCTACAGG
GTTGCAGAACCCTTTAGCTCCTTGGGTGCTTTCTCTAGCTCCTCCATTGA
GGGCCCTGTGTTCCATCCAATAGCTGACTATGAGCATCCACGTCTGTATT
TGCCAAGCACTGGCCTAGCCTCACAGGGAACAGCTGTATCAGGGTCCCTT
ATCTCCTTGTACAAAGCTCAAATCTAAGTGGATCAAAAAACTCCACATAA
AACCAGAGACACTGAAATGTATAGAGGAGAAAGTGGGGAAAAGCCTCGAA
GATATGGGCACAGGGGAAAAGTTCCTAAACAGAACAGCAGTGGCTTGTGC
TGTAAGATCAAGAATTGACAAATGGGACCTCATAAAATTGCAAAGCTTCT
GTAAGGCAAAAGACACTGTCAATAAGACAAAAAGGCCACCAACAGATTGG
GATAGGATTTTTACCCATCCTTATTCTGATAGGGAACTATTATCCAATAT
ATACTAAGAGCTCTAGAAGCTGGACTCCATAAATTCAAATAATCCCGCTA
ATAGTTG

Query= MSMg01no083_k08.b1 MSMg01no083_k08.b1 CHROMAT_FILE:
MSMg01no083_k08.b1 PHD_FILE: MSMg01no083_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:26 2005
         (520 letters)



>mm_chr3_18986939_18987858
          Length = 920

 Score =  820 bits (424), Expect = 0.0
 Identities = 430/432 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttttggcactggaagctgccaatgggtctatcctgaactatattgtgcctgtc 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ggaattcttttggcagtggaagctgccaatgggtctatcctgaactatattgtgcctgtc 373

                                                                       
Query: 64  tcctctctcctcctgcctcgctgaaagcctgtgccttacttgtgttctccttttcctctc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tcctctctcctcctgcctcgctgaaagcctgtgccttacttgtgttctccttttcctctc 313

                                                                       
Query: 124 tgggatctggaaaatccacctccatatcttcacccattgattagcttctgtcgataaata 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tgggatctggaaaatccacctccatatcttcacccattgattagcttctgtcgataaata 253

                                                                       
Query: 184 aagatttatttagccagtcaaacaattagggaaactctccctatagatccctttaggagt 243
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 aagatttatttagccagttaaacaattagggaaactctccctatagatccctttaggagt 193

                                                                       
Query: 244 atcttgacatagtggtcttagttgtggtttataagctttacagctaggtaggactgttga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 atcttgacatagtggtcttagttgtggtttataagctttacagctaggtaggactgttga 133

                                                                       
Query: 304 ttgacaacctctttggtaccctgaaagctggtattcagggatgaggttttcaggacagat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ttgacaacctctttggtaccctgaaagctggtattcagggatgaggttttcaggacagat 73

                                                                       
Query: 364 ccagcttgagttttctgagtcctgtgtctgttgtaactacagccgtggggagtcaaccaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72  ccagcttgagttttctgagtcctgtgtctgttgtaactacagccgtggggagtcaaccaa 13

                       
Query: 424 tggcaacagaca 435
           ||||||||||||
Sbjct: 12  tggcaacagaca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)