BAC Information

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BAC

Clone NameMSMg01-084J09
Chromosome3 (Build37)
Map Location 128,582,055 - 128,582,443
singlet/doubletsinglet
Overlap genenone
Upstream gene5730508B09Rik, LOC100043382, EG668828, LOC100043393
Downstream geneEG668831, Pitx2, Enpep, LOC100043415, LOC435755, LOC668840, Elovl6, LOC100043758, Egf, Gm421, Rrh, Nola1, Cfi, Pla2g12a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084J09.T7 (MSMg01no084_j09.b1)MSMg01-084J09.TJ (MSMg01no084_j09.g1)
ACCAG304396AG304397
length698702
length of high quality
(start - end)
396 (39 - 434)416 (72 - 487)
definitionCHROMAT_FILE: MSMg01no084_j09.b1 PHD_FILE: MSMg01no084_j09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:39 2005CHROMAT_FILE: MSMg01no084_j09.g1 PHD_FILE: MSMg01no084_j09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAGGATCCGCGGAAT
TCTTTTGAGACCCACATTAGGTCTTCAGTCATATTCTATACCGATGCTCC
TTCGGATAAATGTAGGCTAAGAAACTCTAAACTTTCTGATCTCGGTAAAA
ATGAAGCCCTTATTTTAAATAGATACTGTAAAAAAGATGCATGCTTTTAG
GAGTTAAAAACAATAAGTGATATTTTTTCTTTTTCTGGGAGAAATGTCCA
TCTGATATCTGAGTCAAGTTTTAAATGATTTGGCAATAAAGCTTTGAGAA
GGTTTTAGAGACAGGTAAAATCTTTATTCTATTCAACTGCCTCATGAGGA
CTGGTGATGTCAAGTCCTCAGCTCATCTAAAGCCTTAGCCACTGGTGTCC
AGGAAGTGAGAGGCACTCTGAGTGACTATTTTACACAGACTGGTAGAGCC
GTGAGAAAGCCCATCTGAAGAAGTGACAGGAAGTGTGCTTATCCTTCTCA
ACATATAGATGTCATGAACAGCAGAGAGTAAGACATTCCAAGACTATGAA
CATTCTTTGGTCTTAATTATGTATCTAATTGAATGTCTGTCAATACCTTT
GATAGACATATTATTAGCAATAAGGCCTACTATGATAAACATAACTTATA
TATGAGAATGAAACACTGAATTTTTTAAACCAAAACACAATGTCTGGG
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTATGATCCCTGTGCTGGGAGTCAGAGGC
AGGAGGACCCCTGGGGCTTAGTGACTTCCTAATCCCACCAATCAAGTAAA
CTCTAGGTTCAGTGAGAGACTGTTGAAAAATAAGGTGGAGACACTGATGT
TAACTTCTGGCTTTCAAAGCCATGTGCATGGGAGAACACGTGCGCATGCA
CAGCTACACACATGCACACTATACTACAACACACACATGGACATATGCAC
ACACACAAAGAAGATAATAATAATAACAACAATAATAAAAACAAATTCCA
GCACTTTATATATTAAAGTACATATCTCTCTAGTCTTTGAACAATCATGA
CTCATTATTATTGTCATTTACTATTGTTATTATTATCATTCTTCAAAGAG
CAAACTTAGGTTTGAGGAAGTGAATGAACTTGACTTATGTCCCAGTAGTA
GTATGGTTATAGAGCTAAGCTATGTGACTGTAGAGTGTGACCAACAGGTA
AGAAAATAACCAACTCCCTCAATTTGTCCTTTGACGCTCATGCATCTTTC
AAAACAAAACAAATGTCATACATGTACACACATACCGTTATCATTTTTAA
TTATTTTTCTTTTTCTAAGATATTTACATAACCTGTACCCCTTTTTTGTT
CN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_j09.b1 MSMg01no084_j09.b1 CHROMAT_FILE:
MSMg01no084_j09.b1 PHD_FILE: MSMg01no084_j09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:39 2005
         (396 letters)



>mm_chr3_128581848_128582643
          Length = 796

 Score =  694 bits (359), Expect = 0.0
 Identities = 383/391 (97%), Gaps = 4/391 (1%)
 Strand = Plus / Plus

                                                                       
Query: 8   ggaattcttttgagacc-cacattaggtcttcagtcatattctataccgatgctccttcg 66
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ggaattcttttgagaccagacattaggtcttcagtcatattctataccgatgctccttcg 267

                                                                       
Query: 67  gataaatgtaggctaagaaactctaaactttctgatctcggtaaaaatgaagcccttatt 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gataaatgtaggctaagaaactctaaactttctgatctcggtaaaaatgaagcccttatt 327

                                                                       
Query: 127 ttaaatagatactgtaaaaaagatgcatgcttttaggagttaaaaacaataagtgatatt 186
           ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 328 ttaaatagatactgt-aaaaagatgcatgcttttaggag-taaaaacaataagtgatatt 385

                                                                       
Query: 187 ttttctttttctgggagaaatgtccatctgatatctgagtcaagttttaaatgatttggc 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ttttctttttctgggagaaatgtccatctgatatctgagtcaagttttaaatgatttggc 445

                                                                       
Query: 247 aataaagctttgagaaggttt-tagagacaggtaaaatctttattctattcaactgcctc 305
           ||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 446 aataaagctttgagaagctttattgagacaggtaaaatctttattctattcaactgcctc 505

                                                                       
Query: 306 atgaggactggtgatgtcaagtcctcagctcatctaaagccttagccactggtgtccagg 365
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 506 atgaggactggtgatgtcaagttctcagctcatctaaagccttagccactggtgtccagg 565

                                          
Query: 366 aagtgagaggcactctgagtgactattttac 396
           |||||||||||||||||||||||||||||||
Sbjct: 566 aagtgagaggcactctgagtgactattttac 596


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 796
Length adjustment: 9
Effective length of query: 387
Effective length of database: 787
Effective search space:   304569
Effective search space used:   304569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)