Query= MSMg01no085_k21.b1 MSMg01no085_k21.b1 CHROMAT_FILE:
MSMg01no085_k21.b1 PHD_FILE: MSMg01no085_k21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:36:46 2005
(201 letters)
>mm_chr3_39987817_39988417
Length = 601
Score = 331 bits (171), Expect = 2e-95
Identities = 191/203 (94%), Gaps = 10/203 (4%)
Strand = Plus / Plus
Query: 1 tgccacctgtatagttgctgttcaaataattcatctggatggtctgctagatggactttt 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgccacctgcatagttgctgttcaaataattcatctggatggtctgctagatggactttt 260
Query: 61 ttctctaccaaattttttcagtaaaaaataaagacatttccaaatgttaaagaaaatact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctctaccaaattttttcagtaaaaaataaagacatttccaaatgttaaagaaaatact 320
Query: 121 gtattcctataaagctacaagatattttacataaaaataaataaatatttggactgagac 180
||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtattccta--------caagatattttacataaaaataaataaatatttggactgagac 372
Query: 181 ttatccgttttttttt--ggacc 201
|||||| ||||||||| |||||
Sbjct: 373 ttatccttttttttttttggacc 395
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 201
Length of database: 601
Length adjustment: 8
Effective length of query: 193
Effective length of database: 593
Effective search space: 114449
Effective search space used: 114449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no085_k21.g1 MSMg01no085_k21.g1 CHROMAT_FILE:
MSMg01no085_k21.g1 PHD_FILE: MSMg01no085_k21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:36:46 2005
(270 letters)
>mm_chr3_40110771_40111440
Length = 670
Score = 522 bits (270), Expect = e-153
Identities = 270/270 (100%)
Strand = Plus / Minus
Query: 1 gtgtctcagcgtgagccccgttacctacctctaattctttcacacacagatcttccagat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gtgtctcagcgtgagccccgttacctacctctaattctttcacacacagatcttccagat 411
Query: 61 gttttttgggggaggatgtgtctctttataataaaagttatatcagccatcatttccaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 gttttttgggggaggatgtgtctctttataataaaagttatatcagccatcatttccaca 351
Query: 121 tattcctatggcacccatttgtgagaatttgtactacattcccaaacatctgcagacagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tattcctatggcacccatttgtgagaatttgtactacattcccaaacatctgcagacagt 291
Query: 181 atctctacaattacttctgaagttactagccacctgtcagcacagggattactaccccat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 atctctacaattacttctgaagttactagccacctgtcagcacagggattactaccccat 231
Query: 241 gcactgtcaagtgggaatcaaagtttttta 270
||||||||||||||||||||||||||||||
Sbjct: 230 gcactgtcaagtgggaatcaaagtttttta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 670
Length adjustment: 9
Effective length of query: 261
Effective length of database: 661
Effective search space: 172521
Effective search space used: 172521
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
