MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-085P10
Chromosome	3 (Build37)
Map Location	152,814,416 - 152,814,673
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Gipc2, Dnajb4, Fubp1, Nexn, C030011O14Rik, Usp33, Zzz3, Ak5, LOC100040705, Pigk, Rpl29-ps1, St6galnac5
Downstream gene	LOC100040750, St6galnac3, EG545578, Asb17, Msh4, Rabggtb, Acadm, Slc44a5, LOC100040980
Link	Open Mouse BAC browser

Click to get alignment info.

name	Gipc2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:54120 MGI:1889209
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dnajb4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67035 MGI:1914285
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Fubp1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:51886 MGI:1196294
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nexn (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68810 MGI:1916060
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	C030011O14Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:215708 MGI:1924567
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Usp33 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:170822 MGI:2159711
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Zzz3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:108946 MGI:1920453
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Ak5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:229949 MGI:2677491
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040705 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040705
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Pigk (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:329777 MGI:1913863
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Rpl29-ps1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19945 MGI:99686
definition	gene_synonym : Rpl43-ps1 note : ribosomal protein L29, pseudogene 1 pseudo : _no_value

name	St6galnac5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:26938 MGI:1349471
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040750 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040750
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	St6galnac3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20447 MGI:1341828
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG545578 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:545578 MGI:3648487
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 282 ESTs, 10 Proteins

name	Asb17 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66772 MGI:1914022
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Msh4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:55993 MGI:1860077
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rabggtb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19352 MGI:99537
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Acadm (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11364 MGI:87867
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc44a5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:242259 MGI:3035141
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040980 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040980
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 6 Proteins pseudo : _no_value

name	Gipc2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:8394257 GeneID:54120 MGI:1889209
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : GIPC PDZ domain containing family, member 2 transcript_id : NM_016867.1

name	Dnajb4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142381383 GeneID:67035 MGI:1914285
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DnaJ (Hsp40) homolog, subfamily B, member 4 transcript_id : NM_025926.2

name	Dnajb4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142371821 GeneID:67035 MGI:1914285
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DnaJ (Hsp40) homolog, subfamily B, member 4 transcript_id : NM_027287.2

name	Fubp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:134032012 GeneID:51886 MGI:1196294
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : far upstream element (FUSE) binding protein 1 transcript_id : NM_057172.3

name	Nexn (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:41054993 GeneID:68810 MGI:1916060
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nexilin transcript_id : NM_199465.1

name	C030011O14Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:68226734 GeneID:215708 MGI:1924567
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA C030011O14 gene transcript_id : NM_174868.3

name	Usp33 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116008149 GeneID:170822 MGI:2159711
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ubiquitin specific peptidase 33 transcript_id : NM_133247.2

name	Usp33 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116008147 GeneID:170822 MGI:2159711
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ubiquitin specific peptidase 33 transcript_id : NM_001076676.1

name	Zzz3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124053450 GeneID:108946 MGI:1920453
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger, ZZ domain containing 3 transcript_id : NM_001080755.1

name	Zzz3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124053446 GeneID:108946 MGI:1920453
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger, ZZ domain containing 3 transcript_id : NM_198416.2

name	Ak5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486886 GeneID:229949 MGI:2677491
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : adenylate kinase 5 transcript_id : NM_001081277.1

name	Pigk (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:87116687 GeneID:329777 MGI:1913863
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphatidylinositol glycan anchor biosynthesis, class K transcript_id : NM_178016.2

name	Pigk (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:87116684 GeneID:329777 MGI:1913863
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphatidylinositol glycan anchor biosynthesis, class K transcript_id : NM_025662.4

name	St6galnac5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142381574 GeneID:26938 MGI:1349471
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1, 3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 transcript_id : NM_012028.3

name	LOC100040750 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149252003 GeneID:100040750
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100040750 transcript_id : XM_001475181.1

name	St6galnac3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130191 GeneID:20447 MGI:1341828
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1, 3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 transcript_id : NM_011372.2

name	EG545578 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94369914 GeneID:545578 MGI:3648487
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 282 ESTs, 10 Proteins product : predicted gene, EG545578, transcript variant 1 transcript_id : XM_619973.3

name	Asb17 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801325 GeneID:66772 MGI:1914022
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ankyrin repeat and SOCS box-containing protein 17 transcript_id : NM_025758.3

name	Msh4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130744 GeneID:55993 MGI:1860077
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mutS homolog 4 (E. coli) transcript_id : NM_031870.2

name	Rabggtb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6755263 GeneID:19352 MGI:99537
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RAB geranylgeranyl transferase, b subunit transcript_id : NM_011231.1

name	Acadm (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142344992 GeneID:11364 MGI:87867
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : acyl-Coenzyme A dehydrogenase, medium chain transcript_id : NM_007382.2

name	Slc44a5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:134053956 GeneID:242259 MGI:3035141
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 44, member 5 transcript_id : NM_001081263.1

name	Gipc2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:8394258 CCDS:CCDS17914.1 GeneID:54120 MGI:1889209
definition	GO_function : GO:0005515 - protein binding [Evidence IEA] codon_start : 1 note : semaF cytoplasmic domain associated protein 2 product : GIPC PDZ domain containing family, member 2 protein_id : NP_058563.1

name	Dnajb4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313156 CCDS:CCDS17915.1 GeneID:67035 MGI:1914285
definition	GO_function : GO:0031072 - heat shock protein binding [Evidence IEA]; GO:0051082 - unfolded protein binding [Evidence IEA] GO_process : GO:0006457 - protein folding [Evidence IEA] codon_start : 1 product : DnaJ (Hsp40) homolog, subfamily B, member 4 protein_id : NP_080202.1

name	Dnajb4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312512 CCDS:CCDS17915.1 GeneID:67035 MGI:1914285
definition	GO_function : GO:0031072 - heat shock protein binding [Evidence IEA]; GO:0051082 - unfolded protein binding [Evidence IEA] GO_process : GO:0006457 - protein folding [Evidence IEA] codon_start : 1 exception : mismatches in translation product : DnaJ (Hsp40) homolog, subfamily B, member 4 protein_id : NP_081563.1

name	Fubp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84662730 GeneID:51886 MGI:1196294
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA] GO_process : GO:0006817 - phosphate transport [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : far upstream element (FUSE) binding protein 4 product : far upstream element (FUSE) binding protein 1 protein_id : NP_476513.2

name	Nexn (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:41054994 GeneID:68810 MGI:1916060
definition	GO_component : GO:0005924 - cell-substrate adherens junction [Evidence ISS] GO_function : GO:0051015 - actin filament binding [Evidence ISS] codon_start : 1 exception : mismatches in translation note : nF actin binding protein product : nexilin protein_id : NP_955759.1

name	C030011O14Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:68226735 CCDS:CCDS17916.1 GeneID:215708 MGI:1924567
definition	codon_start : 1 product : hypothetical protein LOC215708 protein_id : NP_777357.2

name	Usp33 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:116008150 CCDS:CCDS17918.1 GeneID:170822 MGI:2159711
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005737 - cytoplasm [Evidence ISS]; GO:0030891 - VCB complex [Evidence ISS] GO_function : GO:0004197 - cysteine-type endopeptidase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS]; GO:0004221 - ubiquitin thiolesterase activity [Evidence IEA]; GO:0004843 - ubiquitin-specific protease activity [Evidence ISS]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0016579 - protein deubiquitination [Evidence ISS]; GO:0006511 - ubiquitin-dependent protein catabolism [Evidence ISS] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; pVHL-interacting deubiquitinating enzyme 1; Vhlh-interacting deubiquitinating enzyme 1; ubiquitin specific protease 33 product : ubiquitin specific protease 33 isoform 1 protein_id : NP_573510.2

name	Usp33 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:116008148 GeneID:170822 MGI:2159711
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005737 - cytoplasm [Evidence ISS]; GO:0030891 - VCB complex [Evidence ISS] GO_function : GO:0004197 - cysteine-type endopeptidase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS]; GO:0004221 - ubiquitin thiolesterase activity [Evidence IEA]; GO:0004843 - ubiquitin-specific protease activity [Evidence ISS]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0016579 - protein deubiquitination [Evidence ISS]; GO:0006511 - ubiquitin-dependent protein catabolism [Evidence ISS] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; pVHL-interacting deubiquitinating enzyme 1; Vhlh-interacting deubiquitinating enzyme 1; ubiquitin specific protease 33 product : ubiquitin specific protease 33 isoform 2 protein_id : NP_001070144.1

name	Zzz3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124053451 GeneID:108946 MGI:1920453
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0045449 - regulation of transcription [Evidence IEA] codon_start : 1 product : zinc finger, ZZ domain containing 3 protein_id : NP_001074224.1

name	Zzz3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124053447 GeneID:108946 MGI:1920453
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0045449 - regulation of transcription [Evidence IEA] codon_start : 1 product : zinc finger, ZZ domain containing 3 protein_id : NP_940808.2

name	Ak5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486887 GeneID:229949 MGI:2677491
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA] GO_function : GO:0004017 - adenylate kinase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0019201 - nucleotide kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0046034 - ATP metabolism [Evidence IEA]; GO:0006139 - nucleobase, nucleoside, nucleotide and nucleic acid metabolism [Evidence IEA] codon_start : 1 product : adenylate kinase 5 protein_id : NP_001074746.1

name	Pigk (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29789447 CCDS:CCDS17920.1 GeneID:329777 MGI:1913863
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0042765 - GPI-anchor transamidase complex [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004197 - cysteine-type endopeptidase activity [Evidence IEA]; GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO:0048503 - GPI anchor binding [Evidence ISS]; GO:0003923 - GPI-anchor transamidase activity [Evidence ISS]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0001509 - legumain activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS] GO_process : GO:0016255 - attachment of GPI anchor to protein [Evidence ISS]; GO:0006506 - GPI anchor biosynthesis [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; GPI transamidase; phosphatidylinositol glycan, class K product : phosphatidylinositol glycan anchor biosynthesis, class K isoform 2 protein_id : NP_821135.1

name	Pigk (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29788753 CCDS:CCDS17919.1 GeneID:329777 MGI:1913863
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0042765 - GPI-anchor transamidase complex [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004197 - cysteine-type endopeptidase activity [Evidence IEA]; GO:0008234 - cysteine-type peptidase activity [Evidence IEA]; GO:0048503 - GPI anchor binding [Evidence ISS]; GO:0003923 - GPI-anchor transamidase activity [Evidence ISS]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0001509 - legumain activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS] GO_process : GO:0016255 - attachment of GPI anchor to protein [Evidence ISS]; GO:0006506 - GPI anchor biosynthesis [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; GPI transamidase; phosphatidylinositol glycan, class K product : phosphatidylinositol glycan anchor biosynthesis, class K isoform 1 protein_id : NP_079938.1

name	St6galnac5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31543709 GeneID:26938 MGI:1349471
definition	GO_component : GO:0030173 - integral to Golgi membrane [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0008373 - sialyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA] GO_process : GO:0006486 - protein amino acid glycosylation [Evidence IEA] codon_start : 1 exception : mismatches in translation note : ST6GalNAc V; sialyltransferase 7 ((alpha-N-acetylneuraminyl 2,3-betagalactosyl-1,3)-N-acetyl galactosaminide alpha-2,6-sialyltransferase) E product : ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1, 3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 protein_id : NP_036158.2

name	LOC100040750 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149252004 GeneID:100040750
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475231.1

name	St6galnac3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:10304989 GeneID:20447 MGI:1341828
definition	GO_component : GO:0030173 - integral to Golgi membrane [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA] GO_function : GO:0016740 - transferase activity [Evidence IEA]; GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA] codon_start : 1 note : ST6GalNAc III; sialyltransferase 7 ((alpha-N-acetylneuraminyl 2,3-betagalactosyl-1,3)-N-acetyl galactosaminide alpha-2,6-sialyltransferase) C product : ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1, 3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein_id : NP_035502.1

name	EG545578 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82891888 GeneID:545578 MGI:3648487
definition	codon_start : 1 product : similar to ubiquitin-conjugating enzyme UbcH7 isoform 1 protein_id : XP_619973.2

name	Asb17 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27754116 CCDS:CCDS17922.1 GeneID:66772 MGI:1914022
definition	GO_process : GO:0007242 - intracellular signaling cascade [Evidence IEA] codon_start : 1 product : ankyrin repeat and SOCS box-containing protein 17 protein_id : NP_080034.2

name	Msh4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13994197 GeneID:55993 MGI:1860077
definition	GO_component : GO:0000793 - condensed chromosome [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA]; GO:0000795 - synaptonemal complex [Evidence IDA] GO_function : GO:0003684 - damaged DNA binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006259 - DNA metabolism [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0007292 - female gamete generation [Evidence IMP]; GO:0007126 - meiosis [Evidence IDA] [Evidence IMP]; GO:0001541 - ovarian follicle development [Evidence IMP]; GO:0007283 - spermatogenesis [Evidence IMP]; GO:0007129 - synapsis [Evidence IMP] codon_start : 1 note : MutS homolog 4 variant theta 1; MutS homolog 4 variant iota 1 product : mutS homolog 4 protein_id : NP_114076.1

name	Rabggtb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755264 CCDS:CCDS17923.1 GeneID:19352 MGI:99537
definition	GO_function : GO:0003824 - catalytic activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004659 - prenyltransferase activity [Evidence IEA]; GO:0004663 - Rab-protein geranylgeranyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 exception : mismatches in translation note : Rab geranylgeranyl transferase, beta subunit product : RAB geranylgeranyl transferase, b subunit protein_id : NP_035361.1

name	Acadm (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680618 CCDS:CCDS17924.1 GeneID:11364 MGI:87867
definition	GO_component : GO:0005759 - mitochondrial matrix [Evidence ISS]; GO:0005739 - mitochondrion [Evidence ISS] [Evidence IDA] GO_function : GO:0003995 - acyl-CoA dehydrogenase activity [Evidence ISS] [Evidence IEA]; GO:0050660 - FAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA] GO_process : GO:0006118 - electron transport [Evidence IEA]; GO:0006635 - fatty acid beta-oxidation [Evidence ISS]; GO:0006631 - fatty acid metabolism [Evidence IEA]; GO:0006629 - lipid metabolism [Evidence IEA]; GO:0008152 - metabolism [Evidence IEA] codon_start : 1 product : acetyl-Coenzyme A dehydrogenase, medium chain protein_id : NP_031408.1

name	Slc44a5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:134053957 GeneID:242259 MGI:3035141
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : solute carrier family 44, member 5 protein_id : NP_001074732.1

name	LOC100040705 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040705
definition	number : 3 pseudo : _no_value

name	LOC100040705 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040705
definition	number : 2 pseudo : _no_value

name	LOC100040705 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040705
definition	number : 1 pseudo : _no_value

name	LOC100040980 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149252008 GeneID:100040980
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 6 Proteins product : similar to LOC446231 protein pseudo : _no_value transcript_id : XR_032549.1

clone name	MSMg01-406A22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-392E23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-401G02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-280J06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-317G12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-331I05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-461P19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-397O16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-461B20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-375A12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-342J01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-543N02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-151L02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-262G04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422B05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-479L03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-454E02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-185A20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-098B22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-082F05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-081O23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-546E24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-113A10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-150M08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-531G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-147A10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-308J07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-074J24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-537D03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-389O09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-057C04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-534J14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-367N11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-154G02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-161D03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-108I02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-368F13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-352F13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-459H01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-408A04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-501P18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-466K11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-321E12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-316O12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-510B15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-265E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-149M17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-188E01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-311E06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-105K06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-349B03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-480C22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-389F15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-144I01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-466M06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-512C24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-115F14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-390H22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-445M23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-321M06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-497C08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-045N01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-475D13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-075A24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-070D18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-483P21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-170F19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-194C04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-111H03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-538K22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-083E24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-080K07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-085P10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-537P11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-072E14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-080G13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-194F08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-366K01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-444M16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-110M18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-488D11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-521C21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-154A14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-094M17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-528J18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-307J10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-439I23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-166B04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-486G18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-130P13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-114C11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-412G04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-274F22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-332J15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-470D18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-130J18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-415N11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-453I10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-358N04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-367N06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-070E15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-298N19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-267I16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-264L05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-177P21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-420F19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-386H02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-446K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-119L13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-119L23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-529C09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-388K02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-333E14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-467M09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-266K04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-327D09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-397P16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-429C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-204A12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259D24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-090I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139F10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107H08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322D24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-185N06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-134O01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-124N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-033N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-118B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198C08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-307H01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176M03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050H15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305C18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169M18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036E15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194J20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-177H13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-157I19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-033O01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291D10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-127A04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-282J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307J14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013F04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-059I05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-042P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249E02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053O21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-226P14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-069A11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273M07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-130A05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-157J04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193B12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184O05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-176G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-313A10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-089O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152O23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001D04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-334F15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-059O17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-034H06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-227B07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-150O15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-304G08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-074A11
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-085P10.T7 (MSMg01no085_p10.b1)	MSMg01-085P10.TJ (MSMg01no085_p10.g1)
ACC	AG305401	AG305402
length	1,123	1,135
length of high quality (start - end)	264 (12 - 275)	41 (75 - 115)
definition	CHROMAT_FILE: MSMg01no085_p10.b1 PHD_FILE: MSMg01no085_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:27 2005	CHROMAT_FILE: MSMg01no085_p10.g1 PHD_FILE: MSMg01no085_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:28 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	TAAAATTCGTAGACATCTTGGAAAGTTTTTGTTGCCCCTTGAATTTGCAC CCGCCCATCACCTATGATGTCATATTTCAATTCCACTTTTAGATAACAGC AAAATGACTTCTTGTTCAGCTCTAAGGAATAAGCAAGTGTTCTCACAGTG GCAACCTAGAAACTACCCATTCTTTTCATCAGGAGCAGAATGGATGGATT GTGACATGTTATGAGTATGAAAAAATAGAAATTGCCTAACTAAATGGTCA TCATTACTCATCTATGGAAGGACTAGGTAACCACTGAGCAGGAGCTTACA GCTGACGGGTCAGGGGCAGGAGCATTTTTTTGTGCAGGCGGTCAGGGCCT CAGGTTCAGGTACAGCCTTTATTTCCTCATTTCTGTGTTCCCATAGCATA TATATTTGTCCCTATTTTCTGCATACTATTTTTTAGATCACTGATTTTAC TACTTTGTCAACAGATATTATGAATGTATTTGTGCCTTTATGTTTTGATT ACATTCTATTAATACTCTTTTTCTATTATTTTCTTCTTCTTCTTTCTCAC TTTATTATTTATTTGTTTGCATTGACTTTTTTCTTCCTTTCGCTTTTGTT TTTTCTTTTGTTCTTCACCCTTTATACTTTTTTGTTTTATTTACTATGTT CTTTTTTTCACTCTCTCTTATTTTCTTCTTTTTTTTTTTCTTTCTTCCTT TTTTTTTTCTCTTTTTTTTTTTTCTTTTTTTTTTTCTTTTTTATTGATTT CTCTTTATTTTTTTTTTTTTTCTTTTTTTCTTTTTTCTACTATTCTCTTA TTCTTTTTTTTTTTTCTTTTTTTTTCTTCCTCTTCTTTTTTTTTTCTTTT AATTTTTACTATTTTTTTTTGTTATTACTTTCTCTCTATTTTATTCCTTC TTTTATTTCTATTTTATTTCCTTATTTCCATTTTCATTTTATCTTTTTCT CTTTTTTTTTTCTCTCTTCTTCCTTATCTTCTTTTTTATTTTATCCTCTT TCTTTATTTTCCTTTCTTTTTTTTCTATTATTTTTTTTTTTTTCTTCCTA TTTCATTCTTCCTCTTATTTTTCTTTCTTTCTTATCTTCCTTCTTTTATT TTCCTATCTTATTTTCTTCTATA	GGACATGAGGCCCCCCCNCANNAGAGNNCAGANNGNAGNNNCCCCTAAAA GACCCCCCGAGAANANGGCANCNCACTCAGCTGTACTTAACTGTATGTGC ATATGTATGCGTGTGCGGTGTGTTTGCGCATGAGGGGGTGCGCCCCCCTC CCCATTGACACCCAACAACCACACCATACCACCCACACACCACCAACATC AAACCCCCCACCAACACACCCCCCACCATAAACACCCACCAACACCCCAC ACACACACCTTTTTTTTCTCCCCCACAACACCTACACACACCACAAAACA CCTCCCCCACATCCGCCGCACCACCACACTTTTTTTTTTTACAACCAACC ACACACCAACCAATAGAGAAAAAAAAACCCCCCCCCCCTTAACCCCCCCC CCCAAACCCCCACAACCACCAAAAAAAAAAAAAAAAACCACCCGCCACAC ACCCCCACCCACACACCACCCCACCCACCCCCACACACCACACACCACCA CCCCACCCACACACAAACAACACCACCACACACACCACACAACAACACCC ACCCACACCCCAAACCACACACCAACAACCACAAAACACCACCCCCCCAC CCCCACCACACCACACCAACCCCACCACCCCACAACCAAACCCAAAAACC CCACCACCCCCCAAACCCCCACCCCACACCACACCCAACACCACCACACA CCCACCACAACAAACCACCACATTTCTTTTTTTTTTCACCCACCCCAAAA CCACCACACCACATCTCCACAAACACCCCCCACAACCAACACACCACCCA ACACACAACTCAAACTCCCTCACACAAACCCACACCACACCAAACCCCCC CCCCACCCACACCATATTCCCCAACCACCAACCACAAAACCCCCACACAC CCCCCAAACACACACTCACCTCCCACACCCCCAACTAACCCCCCCACAAA CACCACCCCAACAATCCCCCCACCCTACCAAACAACACCTCTACAAACCC CCCTTCTAAAAAGTAATAAAAAAAATAAAAATAAGATAAAAAAAATTAAA ATAATATACATATAAAAATAAAATAAAAATAAAATACAGAAATAATAAAA ACCTACAAACCACACCACCATCACCCCTCCCTCCT
quality values	Open. Hide. 10 10 10 16 10 10 6 6 8 8 9 15 25 30 31 31 31 36 36 36 38 50 36 36 36 36 33 31 31 31 31 29 23 25 17 9 8 8 10 10 15 26 37 30 25 15 13 10 10 11 16 16 14 15 23 24 33 33 33 43 43 43 48 59 57 47 42 38 37 34 33 36 39 43 59 48 48 48 48 48 54 59 59 36 36 36 43 43 42 37 30 28 32 31 31 32 29 31 25 28 28 37 39 42 57 48 48 54 48 48 48 42 42 37 42 37 43 39 39 39 42 39 39 39 39 42 43 57 44 44 42 32 32 32 35 43 44 35 35 35 43 44 50 43 43 43 43 42 38 31 31 31 43 43 43 38 38 19 19 27 27 27 11 15 12 38 25 47 50 50 37 43 52 52 50 57 52 52 43 27 24 11 11 12 28 28 32 32 18 24 24 41 41 34 38 20 27 27 41 43 43 52 43 57 52 52 52 52 52 52 50 44 43 33 33 38 43 38 41 27 27 27 23 28 26 26 16 16 18 24 32 43 43 43 43 43 36 19 10 8 8 13 15 43 43 43 43 43 43 44 32 32 15 15 11 12 12 18 28 32 35 35 35 30 38 30 32 28 28 21 25 23 19 19 19 16 14 14 13 18 15 13 10 10 10 10 10 11 18 15 17 12 17 8 8 8 10 12 17 17 14 14 14 23 18 24 18 13 13 13 15 18 21 18 15 17 17 20 20 11 11 9 11 11 12 16 22 27 19 14 10 10 9 10 10 10 15 14 12 14 14 14 17 16 19 9 9 8 8 8 8 8 8 8 10 8 8 9 10 8 8 8 8 8 10 14 16 16 27 26 18 19 12 12 15 13 10 10 10 19 21 25 21 21 15 15 13 15 15 12 12 13 16 12 11 11 11 16 11 12 11 15 12 18 18 20 19 21 24 19 29 12 13 10 10 10 8 8 8 8 8 11 12 12 12 12 16 16 11 11 11 10 8 8 8 8 8 8 8 8 8 8 8 8 10 8 8 9 10 11 15 11 12 12 13 10 9 9 9 9 9 9 8 8 6 6 8 8 10 11 8 8 8 11 12 11 11 13 15 8 8 8 8 8 8 10 10 10 12 12 12 16 10 10 10 8 8 8 8 8 8 8 7 7 8 8 8 8 8 8 8 8 8 8 6 6 8 8 12 10 10 7 6 8 8 8 8 8 8 8 8 8 8 9 9 8 8 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 12 9 10 9 12 13 9 9 8 8 7 6 8 8 8 6 6 8 8 10 9 9 10 10 9 8 8 8 8 8 8 10 10 11 15 11 11 10 10 10 10 12 8 8 8 13 15 10 10 6 6 6 8 8 10 8 8 6 6 8 8 9 11 9 11 11 9 8 8 8 8 8 6 7 8 10 16 13 10 10 10 10 10 11 11 11 17 8 8 8 8 8 8 8 8 8 8 8 8 12 10 10 10 10 8 8 8 8 8 8 10 10 10 8 8 8 10 8 8 8 8 8 8 8 16 11 11 11 22 10 8 8 8 9 8 9 10 8 8 6 6 8 10 10 10 9 9 12 13 13 10 9 8 13 8 10 10 10 10 10 10 10 10 10 12 9 9 8 10 8 9 10 10 19 19 20 14 14 11 12 8 7 7 8 10 11 10 8 8 8 6 6 8 8 8 8 6 6 8 8 10 8 8 8 8 15 15 13 10 10 10 10 13 15 15 15 12 11 11 16 10 10 10 8 11 8 8 8 8 8 10 7 6 8 8 6 6 8 8 8 10 9 15 9 9 10 10 12 8 8 10 13 19 18 18 11 10 10 8 10 7 7 10 12 10 8 8 8 8 8 9 9 10 6 8 8 8 8 8 8 8 11 11 13 11 11 10 13 10 15 13 10 10 6 10 6 6 6 6 12 8 10 10 8 8 8 8 10 10 10 10 10 10 8 10 9 8 8 8 8 8 8 8 8 8 13 12 12 10 9 9 10 11 11 10 12 10 9 6 6 6 6 8 8 8 8 9 8 8 6 6 8 8 9 8 8 8 8 8 8 8 6 6 8 8 8 8 8 12 12 12 19 11 11 10 8 8 10 10 10 9 10 9 8 8 6 6 8 8 8 8 8 10 8 8 6 6 8 8 15 15 13 10 16 17 15 13 10 10 10 8 8 8 8 10 12 8 8 8 8 8 8 8 8 8 8 8 11 15 15 10 10 10 10 8 11 10 9 9 8 8 8 8 6 6 8 8 8 8 8 8 8 8 10 15 10 10 9 9 11 10 11 11 22 19 24 16 14 14 10 10 6 6 8 8 8 11 13 10 9 10 9 10 12 19 17 11 9 9 9 9 8 10 7 7 12 11 18 12 10 8 8 8 6 6 6 6 8 8 10 8 7 6 8 8 10 8 10 10 10 10 10 12 11 8 8 10 8 8 8 12 8 8 8 8 8 8 11 9 10 10 8 8 6 6 8 10 14 9 9 9 10 10 10 10 8 8 10 10 10 8 8 8 8 9 9 9 9 9	Open. Hide. 9 9 9 9 9 9 9 9 9 10 10 12 14 11 8 8 3 0 3 3 0 0 3 22 22 3 0 0 3 21 21 3 0 0 3 0 3 3 0 0 0 3 8 8 8 8 8 7 7 6 6 6 7 11 16 21 32 20 23 14 29 29 3 0 3 0 3 27 27 3 0 3 0 3 23 23 37 37 37 37 37 43 39 39 35 39 39 43 28 34 15 15 11 12 12 12 20 20 23 37 32 43 43 43 37 37 23 31 31 41 27 16 9 8 8 8 8 8 9 15 18 19 13 12 11 10 12 10 10 11 12 12 25 25 25 18 19 11 10 9 9 10 9 9 9 12 10 8 8 8 8 8 8 8 11 6 6 6 6 8 8 10 10 10 10 8 10 8 8 6 6 12 10 8 8 8 8 8 8 10 12 11 11 11 11 9 8 8 6 6 8 8 12 9 8 8 8 8 8 9 9 9 9 10 10 11 11 8 8 6 6 8 8 9 10 10 11 11 9 10 15 8 8 8 8 8 8 9 9 9 8 10 8 10 10 10 12 10 12 9 9 9 8 8 8 8 8 6 6 8 8 10 8 8 8 8 8 8 8 8 8 11 13 11 10 8 10 9 9 9 14 14 8 8 6 6 8 10 7 7 8 8 8 8 8 8 8 8 6 6 8 8 11 11 12 12 11 11 11 11 11 11 9 9 10 10 8 8 6 6 8 8 8 8 9 9 8 8 8 8 10 10 11 9 9 8 8 6 6 6 7 12 14 23 23 23 23 16 14 8 8 8 8 8 10 8 6 6 6 8 8 6 6 8 8 8 8 8 10 10 10 10 8 8 8 8 8 8 8 10 25 32 47 27 22 15 10 10 9 21 30 32 12 12 11 10 9 6 8 8 8 8 8 9 25 27 37 23 19 12 11 9 9 8 15 8 10 8 8 10 10 10 10 11 10 11 10 9 9 9 9 8 11 11 10 12 19 22 25 22 10 12 10 14 14 9 9 9 9 10 8 8 6 6 8 8 8 8 8 9 9 9 9 9 11 9 9 8 7 7 8 9 9 10 9 9 10 8 6 6 6 7 8 9 9 12 9 10 10 8 8 6 6 8 8 8 8 8 8 10 11 10 10 10 10 10 10 13 22 15 13 10 10 11 11 10 9 9 9 9 10 8 8 8 6 8 10 9 9 10 10 13 10 10 9 8 15 8 8 8 8 8 8 6 6 8 8 8 9 10 11 10 10 10 10 10 10 13 11 11 11 8 8 6 7 10 6 6 8 8 10 9 9 8 8 8 8 8 8 8 8 8 10 10 11 8 8 8 8 8 10 9 9 8 8 6 6 8 8 8 8 8 9 10 9 9 8 8 7 6 8 8 13 11 11 8 8 7 6 6 6 6 6 8 8 9 10 9 11 9 8 8 8 8 8 8 8 8 10 10 10 9 8 8 8 8 10 8 8 8 8 10 6 6 8 8 10 10 9 9 8 11 8 13 7 7 8 8 12 8 10 8 8 8 6 8 17 8 10 9 9 10 8 8 6 6 8 8 8 6 6 8 8 9 9 9 10 10 9 8 8 6 6 8 8 10 9 8 8 8 8 8 8 8 8 8 10 7 6 8 8 8 8 8 11 6 6 8 8 13 13 11 10 10 9 9 9 14 15 19 25 21 19 12 10 10 10 10 8 8 6 7 7 8 8 11 12 11 10 8 8 8 8 8 8 10 11 11 9 9 9 8 8 8 8 8 8 8 8 6 6 8 8 6 6 8 8 8 8 8 9 13 10 10 8 8 8 8 8 8 8 10 7 6 8 8 9 9 10 10 8 8 8 8 10 10 8 8 6 6 8 8 8 8 8 8 8 9 12 10 10 9 9 9 9 8 8 8 10 8 8 8 8 7 7 8 8 10 12 16 12 12 10 10 10 10 10 10 10 10 10 10 9 9 8 8 6 6 8 8 8 8 8 8 8 8 8 8 9 8 8 7 6 8 8 11 11 11 11 10 10 8 8 7 7 10 8 9 9 15 11 9 9 9 8 8 6 6 8 8 10 10 13 8 8 10 8 8 8 6 6 8 13 13 10 10 10 11 10 9 9 10 10 8 8 6 6 8 8 11 13 13 10 8 8 6 6 8 8 10 10 10 11 11 8 8 8 8 8 8 10 10 10 10 10 10 8 8 6 6 8 8 8 8 6 6 8 8 8 8 6 6 8 8 8 9 9 9 10 10 8 8 8 8 6 6 8 8 8 8 8 8 8 6 7 8 6 6 7 9 7 7 6 6 6 6 8 8 9 10 10 6 6 6 6 8 8 8 10 12 13 9 9 9 9 11 10 10 12 12 10 10 11 8 8 6 6 6 12 10 19 15 8 8 6 6 8 8 8 8 8 8 8 7 7 6 6 6 7 8 6 10 9 9 9 10 18 12 12 11 16 16 22 15 17 12 18 8 8 8 8 11 11 8 8 11 18 10 10 11 12 12 8 8 10 12 10 15 10 11 9 9 9 9 8 8 8 8 12 13 13 9 9 9 10 7 7 8 8 8 7 8 8 8 8 8 8 8 8 8 9 9 9 11 11

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no085_p10.b1 MSMg01no085_p10.b1 CHROMAT_FILE:
MSMg01no085_p10.b1 PHD_FILE: MSMg01no085_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:37:27 2005
         (264 letters)



>mm_chr3_152814210_152814873
          Length = 664

 Score =  383 bits (198), Expect = e-111
 Identities = 243/262 (92%), Gaps = 8/262 (3%)
 Strand = Plus / Minus

                                                                       
Query: 7   ttggaaagtttttgttgc----cccttgaatttgcacccgcccatcacctatgatgtcat 62
           |||||||||| |||||||        |||||||| ||  |||||||||||||||||||||
Sbjct: 464 ttggaaagttattgttgcaaag----tgaatttggacatgcccatcacctatgatgtcat 409

                                                                       
Query: 63  atttcaattccacttttagataacagcaaaatgacttcttgttcagctctaaggaataag 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 atttcaattccacttttagataacagcaaaatgacttcttgttcagctctaaggaataag 349

                                                                       
Query: 123 caagtgttctcacagtggcaacctagaaactacccattcttttcatcaggagcagaatgg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 caagtgttctcacagtggcaacctagaaactacccattcttttcatcaggagcagaatgg 289

                                                                       
Query: 183 atggattgtgacatgttatgagtatgaaaaaatagaaattgcctaactaaatggtcatca 242
           |||||||||||||| || |||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 288 atggattgtgacatattttgagtatgaaaaaatagaaattgcctaaataaatggtcacca 229

                                 
Query: 243 ttactcatctatggaaggacta 264
             | ||||||||||||||||||
Sbjct: 228 gcaatcatctatggaaggacta 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 664
Length adjustment: 9
Effective length of query: 255
Effective length of database: 655
Effective search space:   167025
Effective search space used:   167025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information