BAC Information

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BAC

Clone NameMSMg01-086C10
Chromosome3 (Build37)
Map Location 83,385,133 - 83,385,345
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094, Dchs2, 1700028M03Rik, LOC100042007
Downstream geneLOC100042091, Sfrp2, LOC633522, Tlr2, D930015E06Rik, Mnd1, Trim2, EG624713, 6330505N24Rik, Arfip1, EG667788
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086C10.T7 (MSMg01no086_c10.b1)MSMg01-086C10.TJ (MSMg01no086_c10.g1)
ACCAG305541AG305542
length672803
length of high quality
(start - end)
380 (19 - 398)213 (132 - 344)
definitionCHROMAT_FILE: MSMg01no086_c10.b1 PHD_FILE: MSMg01no086_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:46 2005CHROMAT_FILE: MSMg01no086_c10.g1 PHD_FILE: MSMg01no086_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TACCTGTCCAAGAGGATCCGCGGAATTCTTTGTTTACCTCTGTACCCCAT
TTTTTGATGGGGTTATTTGAATTTCTGGAGTTCAGTTTCTTGAGTTCTTT
GTATATATTGGCTATTAGTCCCCTATCAGATTTAGGATTGGCAAAAATTA
TTTTCCAATCTGTTGGTGGCCTTTTTGTCTCATTGACAGTATCTTTTGCC
CTACAGAAGCTTCGAAATTTTATGAAGTCACATTTGTTGATTCTTGATCT
TACAGCACAGGCCATTGCTGTTGTGTTTAGGAAATTTTACTTTGTGCCCA
TATCTTTGAGGCTTTTCCCCACTTTCTCCTCTATTAATTTCAATGTCTTT
GGTTTTATGTGGAGTTCGTTGATCCACTTAGACTTGAGTTTTTTACAAGG
AGATAAGAATGGATCAATTTGCATTCTTCTACATGATAACCGGCAGCTGT
GCCAGCACCATTTGTTGAAAACGCTGTCTTTTTTCCACTGCATGCTTTTA
GCTCCCTTGTCAAAGACCACGTGACCATATGTGCGAGAATTTATTTCTGC
GTTTTCAATTGTACTCCACTGATCTACCTGTCCGTCGCTATACCAGTACC
CAGCCTTTCTTTTATTTATCTATCTTACTTGACCTGCTCGCCCCCTTTTT
ACTCATACATGGTGATCCCCCC
NNNCCCCTTTTNNNCCCCCCTTNNCCCCCCTCCTCTNTTCCTCCTCCTTT
NCCTTCCCCTATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCTATTTCTGGAAATAA
GGAGAAAGAGGGGAGGGTAGGAGAAAGGGAAGGAGGGAAGACGAAAATGA
AAACCCACTTTATAGCTAGTTTTGATACATTTCCAACCTAACTGAGCTAG
GAGTTATTGCTCTGTGATATTGCCATGAACTTGATTTTACTTTGTGTTTG
ATTTTTATGTTTGAGACACAGTCTCATGTTGTAGCCCAGGCTGACTTCGA
TCCTCTGGTTTCAGCCTCCTGTTTATTATCATTACGAGAATGTGTCATTA
TCTTAGTCTGTGTTTCCGTGATCTCGAACACTCAAAACCATCTATTCGTC
TAGGCCTCCACTGTTTTCTTCATCCGCCGTGTTCTGCATATAGCCTGCTG
CTCTATCTCTTCCGTCTTCTCTTATGCGCTTTTTCCCCATCCACTCTTCT
GTTCCATTTCCTTTCTCACTTTACCCTGTTTCCTATTTCTCTCGCCCCAT
CTACGACTCCCTACTTTTTGCCTATTCCTTCTCTTTTATGATCAGTCCCC
CCTTTCCTCCTCCCTCCTCTCCCACTGCTCTACTATCTCATATTTCACTT
GCTCCTTATGCTCCAGTTCCCTCTATTGCCATCACTTCTCTTTTTTTCCT
GCATCATCTTCATTCATTTTATCTTTCATCATTCCATTTTTTCTTCTTTT
TCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_c10.g1 MSMg01no086_c10.g1 CHROMAT_FILE:
MSMg01no086_c10.g1 PHD_FILE: MSMg01no086_c10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:37:46 2005
         (213 letters)



>mm_chr3_83384933_83385545
          Length = 613

 Score =  373 bits (193), Expect = e-108
 Identities = 208/213 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccctatttctggaaataaggagaaagaggggagggtaggagaaagggaaggagggaaga 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccctattcctggaaataaggagaaagaggggagggtaggagaaagggaaggagggaaga 260

                                                                       
Query: 61  cgaaaatgaaaacccactttatagctagttttgatacatttccaacctaactgagctagg 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgaaaatgaaaagccactttatagctagttttgatacatttccaacctaactgagctagg 320

                                                                       
Query: 121 agttattgctctgtgatattgccatgaacttgattttactttgtgtttgatttttatgtt 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agttattgttctgtgatattgccatgaacttgattttactttgtgtttgatttttatgtt 380

                                            
Query: 181 tgagacacagtctcatgttgtagcccaggctga 213
           ||||||| ||||||||| |||||||||||||||
Sbjct: 381 tgagacagagtctcatggtgtagcccaggctga 413


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 613
Length adjustment: 9
Effective length of query: 204
Effective length of database: 604
Effective search space:   123216
Effective search space used:   123216
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)