BAC Information

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BAC

Clone NameMSMg01-086L01
Chromosome3 (Build37)
Map Location 157,460,400 - 157,460,679
singlet/doubletsinglet
Overlap genenone
Upstream geneNegr1, LOC668853, LOC546818, Zranb2, Ptger3
Downstream geneLOC433686, LOC624684, Cth, Ankrd13c, Sfrs11, Lrrc40, Lrrc7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086L01.T7 (MSMg01no086_l01.b1)MSMg01-086L01.TJ (MSMg01no086_l01.g1)
ACCAG305933
length678768
length of high quality
(start - end)
---280 (137 - 416)
definitionCHROMAT_FILE: MSMg01no086_l01.b1 PHD_FILE: MSMg01no086_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:31 2005CHROMAT_FILE: MSMg01no086_l01.g1 PHD_FILE: MSMg01no086_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTAAGTACCTTTGCCTTATTCCC
CCGTTTCCACGTTTCTCCCTGCCGTTTTCTCTCTTGATTACTATTTCCCT
TCATTCGTTTATGGGCCTTTTTTCCCCT
NNNNNTTTTNNNNTTTTTTTCCCTTTTTCNNTNNCCCCCTCTTCCCCCCT
TTTTTTATTNATCTATGATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTCGCGAAATTAGGTAATCCTGAGACTT
CTCCTCAGGAGTCATGTGGGCCAGTTGTCCCATCTTCTTCCTCTTTGGGA
GAACATTGAAATGTGGATACTTTTGGAATATGGTTCAATTCTTTTCAACC
CTCTGAAAGGAGCCTCAGGACTTTTCAGTCTTGTAGGGCTTTTATATTGA
GGATTCCCTCAATATAAAATATGTAGTATCATGGGTAACTGAGAGCAGAC
TTGAAGCAAGTCTTCCTGCTTAAAATATTCCCATTTAAACGTATCTTTAG
GTAAATAAATTATACATTTATAGATAATATACACTGCCGCACACACTTAG
AGACAATATACTTGTGTATACATTTACAGATAATATTTGTGCATACCTTT
TTAGATCATATGCATGTGTATACATTTAGAGAGAATATATACATGCATAC
ATTTAGAACACTCTTTAATGATTATGGCATATAACGTATTGCTGCCCTTA
TTATCTTACAGTTCATCTTAACTCATCCTGTGCACCTCCTTTCTTCATAG
AAAGAACGTTATACACTGGAATGAGTAAGTGCACCCGTATTTCTCACTGC
TTGTGTTAATGCGCTTAATCGCAGTGCCTCATGTTCCCCACAGTTCGGCA
TGTCCTTTAATCATATGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_l01.g1 MSMg01no086_l01.g1 CHROMAT_FILE:
MSMg01no086_l01.g1 PHD_FILE: MSMg01no086_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:32 2005
         (280 letters)



>mm_chr3_157460200_157460879
          Length = 680

 Score =  534 bits (276), Expect = e-156
 Identities = 279/280 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taatcctgagacttctcctcaggagtcatgtgggccagttgtcccatcttcttcctcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 taatcctgagacttctcctcaggagtcatgtgggccagttgtcccatcttcttcctcttt 421

                                                                       
Query: 61  gggagaacattgaaatgtggatacttttggaatatggttcaattcttttcaaccctctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gggagaacattgaaatgtggatacttttggaatatggttcaattcttttcaaccctctga 361

                                                                       
Query: 121 aaggagcctcaggacttttcagtcttgtagggcttttatattgaggattccctcaatata 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 aaggagcctcaggacttctcagtcttgtagggcttttatattgaggattccctcaatata 301

                                                                       
Query: 181 aaatatgtagtatcatgggtaactgagagcagacttgaagcaagtcttcctgcttaaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 aaatatgtagtatcatgggtaactgagagcagacttgaagcaagtcttcctgcttaaaat 241

                                                   
Query: 241 attcccatttaaacgtatctttaggtaaataaattataca 280
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 attcccatttaaacgtatctttaggtaaataaattataca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)