BAC Information

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BAC

Clone NameMSMg01-086L15
Chromosome3 (Build37)
Map Location 110,693,576 - 110,693,950
singlet/doubletsinglet
Overlap genenone
Upstream geneNtng1, LOC100043181, LOC100043183, Prmt6
Downstream geneLOC100043190, LOC668712, LOC625585
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086L15.T7 (MSMg01no086_l15.b1)MSMg01-086L15.TJ (MSMg01no086_l15.g1)
ACCAG305957AG305958
length686705
length of high quality
(start - end)
378 (19 - 396)268 (52 - 319)
definitionCHROMAT_FILE: MSMg01no086_l15.b1 PHD_FILE: MSMg01no086_l15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:34 2005CHROMAT_FILE: MSMg01no086_l15.g1 PHD_FILE: MSMg01no086_l15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCTATTCCGAGAGATCCGCGGAATTCTCTACCTGTCAAATTATCCCAT
ATATCCAATATATGGTGTCAGTGCAATGATATACTTGGGACTTGCCCATC
ATCATTCTTTTCTGTTCTTGAGTTTTTCCTTCTTTCTTGTACAACATTTT
TTAAAAGAAATTCCTAAAGGACATGGTTTCCCCAAAACAAGGATTTGTGG
AAGAAAAAAAAAACTGTTAGACAATTATCACAAAGTTCATAAAAGGAGAG
TGACAAAATGTACCTGTAAAATGTATATACATCAGTCTGAGAGAAAGCTA
CATTGACTGATGAGTATATCAGAGGTCTATAGATAAGAGAAATTACCAAC
AGGTATACACAAGGGCAAAGGGGAAAATGAGTGATCAGGTTTTTGGCGCA
AGGAGGGTGGTGTTTTTCTTTCTTCTACTTCTCCTTCTTTACCTTCCCTC
TTTTTTCTCCTCCTATTCTTTTTTCTTTTTTTTTCCCCTTCCATCCATTC
TTTTACCCCACTCTTTTTCCTTCCATCCCTTTAATCATCCATCTCTCTTT
CTTCTACCATCACAATTTTTTCTACCTTCTCCTTTTATTCTTTTTCCCCT
ATATCCCCTTTTCCTCCTTTCTTTCCTCCCAAAAACTCCATTTATAATTT
TACCCTTCTTCCTTTCTTTATTACTTTTTTCCCCCC
GGCGGCGCCTGGTCCCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XTTTAATGATTAATATATAGGAGGAACAGCAGTCTCAATTAATCTGGACC
CCCAAGCTCTCTCAAACACTGAACCATCAAACAGAGAACATACATCAACT
GATATGAGGTCCCCAACACACATGCAGTAGAGGACTTCTGGGTCTCTGTT
CATTCAGAGATGATGCACCTAACTCTCAAGAGACTGGAGGCCCCAGGGAG
TTTAGAAGTTAGGTTGGGTGGGGGTGGAGACATCCACTTGGAGACAGGTG
GTGGGGAGGAGGTATGGGATGCCCCCCTCTTCGTTTTTTTTTCCCCCCCC
CCTCCTCTTCCTTTTCCCCTTTTCCTCTTCCTTCCTTTCTCTTCCCCTTT
TTTACTCTCTTTCTTTTTCCGGTTTCCCTTTTCCTCCCCTCTCCCCCCTC
TCCCTTTCCTTCTTAATTACCTTTCCTCTACTTTCCCCTTTCTAACCTTT
ACTATTTTCCCCCCCCCCTATATCCCTAACTTTCACTCTTACCCACTATT
CCTTTATCCTCCTTTCCCCCTTCCTCTCTCTCCCTTTTCTCTTTCTTTCT
CTTTTTTCTCCCCTTCTTACCTATCGCTCACTTTCACTTTACACTCCACA
CTCTTCAATCACCATTACTACCCCCTTTTCCCCTTTACTCCTTATTTTCC
TTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_l15.b1 MSMg01no086_l15.b1 CHROMAT_FILE:
MSMg01no086_l15.b1 PHD_FILE: MSMg01no086_l15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:34 2005
         (378 letters)



>mm_chr3_110693372_110694150
          Length = 779

 Score =  650 bits (336), Expect = 0.0
 Identities = 366/376 (97%), Gaps = 3/376 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcta-cctg-tcaaattatcccatatatccaatatatggtgtcagtgcaatgat 62
           |||||||||| || | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 gaattctctacccagct-aaattatcccatatatccaatatatggtgtcagtgcaatgat 521

                                                                       
Query: 63  atacttgggacttgcccatcatcattcttttctgttcttgagtttttccttctttcttgt 122
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 atacttgggacttgaacatcatcattcttttctgttcttgagtttttccttctttcttgt 461

                                                                       
Query: 123 acaacattttttaaaagaaattcctaaaggacatggtttccccaaaacaaggatttgtgg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 acaacattttttaaaagaaattcctaaaggacatggtttccccaaaacaaggatttgtgg 401

                                                                       
Query: 183 aagaaaaaaaaaactgttagacaattatcacaaagttcataaaaggagagtgacaaaatg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 aagaaaaaaaaaactgttagacaattatcacaaagttcataaaaggagagtgacaaaatg 341

                                                                       
Query: 243 tacctgtaaaatgtatatacatcagtctgagagaaagctacattgactgatgagtatatc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tacctgtaaaatgtatatacatcagtctgagagaaagctacattgactgatgagtatatc 281

                                                                       
Query: 303 agaggtctatagataagagaaattaccaacaggtatacacaagggcaaaggggaaaatga 362
           ||||||||||||| |||||||||||| || ||||||| ||||||||||||||||||||||
Sbjct: 280 agaggtctatagaaaagagaaattacaaaaaggtatagacaagggcaaaggggaaaatga 221

                           
Query: 363 gtgatcaggtttttgg 378
           ||||||||||||||||
Sbjct: 220 gtgatcaggtttttgg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 779
Length adjustment: 9
Effective length of query: 369
Effective length of database: 770
Effective search space:   284130
Effective search space used:   284130
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)