Query= MSMg01no086_l18.b1 MSMg01no086_l18.b1 CHROMAT_FILE:
MSMg01no086_l18.b1 PHD_FILE: MSMg01no086_l18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:35 2005
(287 letters)
>mm_chr3_100930212_100930898
Length = 687
Score = 499 bits (258), Expect = e-146
Identities = 279/286 (97%)
Strand = Plus / Plus
Query: 1 tctagcactaactcctctagtatgggtcgcatctccctgctactggcgtatcccatgcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 tctagcactaactcctctagtatgggtcgcatctccctgctactggcgtatgtgatgcct 260
Query: 61 cttggttgctaaacattacaactgttactgcagagtatctgaactttgctgtctgtcttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttggttgctaaacattacaactgttactgcagagtatctgaactttgctgtctgtcttt 320
Query: 121 agagggtcagggctgttgagtggatggctgagtggcctgcaggtcatctttcagatcctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagggtcagggctgttgagtggatggctgagtggcctgcaggtcatctttcagatcctc 380
Query: 181 tctaggactgtgtgctgagtgttgttaagaatgctaggcttctctgtagggttaactgat 240
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 381 tctaggactgtgtgctgagtgttgttgagaaagctaggcttctctgtagggttaactgat 440
Query: 241 gctttctctgaatatgtgacccttccgggcccttatagaaggctcg 286
|||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 441 gctttctctgaagatgtgacccttccgggcccttagagaaggctcg 486
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no086_l18.g1 MSMg01no086_l18.g1 CHROMAT_FILE:
MSMg01no086_l18.g1 PHD_FILE: MSMg01no086_l18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:35 2005
(286 letters)
>mm_chr3_101101711_101102396
Length = 686
Score = 524 bits (271), Expect = e-153
Identities = 283/287 (98%), Gaps = 2/287 (0%)
Strand = Plus / Minus
Query: 1 cagccttggcctctgctatacaaggatggaatgaagaccagctcttccccgg-ccttctc 59
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 486 cagccttggcctctgctatacaaggatggaatgaagaccagctctt-cccggtccttctc 428
Query: 60 ttgcatgggctaggtgtcagatgtgaagttattctagaaagtgcataaagctggcttttg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ttgcatgggctaggtgtcagatgtgaagttattctagaaagtgcataaagctggcttttg 368
Query: 120 ttagactgagtagctcttgtggaagttctgtgctagcctttgcccttcattgtaccggat 179
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 367 ttagactgagtagctcttgtggaagttctgtgctagcctttgcccttccttgtaccggat 308
Query: 180 cctatgttccttctctcctgctagaacaggggcccaaggaagccaagcatccctcctacc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 cctatgttccttctctcctgctagaacaggggcccaaggaagccaagcatccctcctacc 248
Query: 240 ttggggtgtgatgactatcagcttccaacccttccatcgggagaatg 286
||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 247 ttggggtgtgatgactatcagcttccaacccttccattgggagaatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
