BAC Information

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BAC

Clone NameMSMg01-086N01
Chromosome3 (Build37)
Map Location 157,460,253 - 157,460,682
singlet/doubletsinglet
Overlap genenone
Upstream geneNegr1, LOC668853, LOC546818, Zranb2, Ptger3
Downstream geneLOC433686, LOC624684, Cth, Ankrd13c, Sfrs11, Lrrc40, Lrrc7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086N01.T7 (MSMg01no086_n01.b1)MSMg01-086N01.TJ (MSMg01no086_n01.g1)
ACCAG306024AG306025
length665672
length of high quality
(start - end)
511 (18 - 528)430 (55 - 484)
definitionCHROMAT_FILE: MSMg01no086_n01.b1 PHD_FILE: MSMg01no086_n01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:42 2005CHROMAT_FILE: MSMg01no086_n01.g1 PHD_FILE: MSMg01no086_n01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TACCTATATTCAGAGGATCCGCGGAATTCTTTCTTCTTCCCTGAGCCCCA
TTTTTTAATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTT
GATATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATC
CTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGC
CTTGCAGAAACTTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATC
TTACAGCACAAGCCATTGCTGTTCTGTTCAGGAATTCTTCCCCTGTGCCC
ATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCATTGTCTA
TGGTTTTATGTGAAGTTCCTTGATCCACTTAGGTTTGACCTTAGTGTAAG
GAGATAAGTATGGATCGATTCGCATTCTTCTACACGATAACAACCAGTTG
TGCCAGCACCAATTGTTGAAAATGCTGTCTTTCTTCCACTGGATGGTTTT
AGCTCCCTTGTCAAAGATCAAGTGACCATAGGTGTGTTGGTTCATTTCTG
GGACTTCAATTCTATTCCATTGAACTACTTGTCCGTCTCTATACCAGCCC
CATGCCGTTTTTACCACAATTGCTCTGTATTATAGCCTTAGGTCCGGCAT
GGTGATTCCTCCACG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXAGGTAATCCTGAGACTTCTCCTCAGGAGTCATGTGGGCCAGTTGTC
CCATCTTCTTCCTCTTTGGGAGAACATTGAAATGTGGATACTTTTGGAAT
ATGGTTCAATTCTTTTCAACCCTCTGAAAGGAGCCTCAGGACTTTTCAGT
CTTGTAGGGCTTTTATATTGAGGATTCCCTCAATATAAAATATGTAGTAT
CATGGGTAACTGAGAGCAGACTTGAAGCAAGTCTTCCTGCTTAAAATATT
CCCATTTAAACGTATCTTTAGGTAAATAAATTATACATTTAGAGATAATA
TATATGTGTACACACTTAGAGACAATATATTTGTGTATACATTTAGAGAT
AATATTTGTGTATACATTTAGAGATAATATGTATGTGTATACATTTAGAG
AGAATATATAGATGTATACATTTAGAAAAATCTAAAAAGAGTATGGTACA
AAAAGTATTGCTGGCTTATAACCTTAGAGCAAATTTAAATTCATTCTGCG
CAACTTAGTTTTTAAAGATAAGAATGTATACCCATGTATGTGTAAGTGTA
CAGGTATATACAAATGCATGTTGTATTGTGTTTATTTGTGCGCATATGGG
CCTATAAGCGTGTATGTATGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_n01.g1 MSMg01no086_n01.g1 CHROMAT_FILE:
MSMg01no086_n01.g1 PHD_FILE: MSMg01no086_n01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:42 2005
         (430 letters)



>mm_chr3_157460206_157461035
          Length = 830

 Score =  824 bits (426), Expect = 0.0
 Identities = 429/430 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggtaatcctgagacttctcctcaggagtcatgtgggccagttgtcccatcttcttcctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 aggtaatcctgagacttctcctcaggagtcatgtgggccagttgtcccatcttcttcctc 418

                                                                       
Query: 61  tttgggagaacattgaaatgtggatacttttggaatatggttcaattcttttcaaccctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tttgggagaacattgaaatgtggatacttttggaatatggttcaattcttttcaaccctc 358

                                                                       
Query: 121 tgaaaggagcctcaggacttttcagtcttgtagggcttttatattgaggattccctcaat 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tgaaaggagcctcaggacttctcagtcttgtagggcttttatattgaggattccctcaat 298

                                                                       
Query: 181 ataaaatatgtagtatcatgggtaactgagagcagacttgaagcaagtcttcctgcttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 ataaaatatgtagtatcatgggtaactgagagcagacttgaagcaagtcttcctgcttaa 238

                                                                       
Query: 241 aatattcccatttaaacgtatctttaggtaaataaattatacatttagagataatatata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 aatattcccatttaaacgtatctttaggtaaataaattatacatttagagataatatata 178

                                                                       
Query: 301 tgtgtacacacttagagacaatatatttgtgtatacatttagagataatatttgtgtata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 tgtgtacacacttagagacaatatatttgtgtatacatttagagataatatttgtgtata 118

                                                                       
Query: 361 catttagagataatatgtatgtgtatacatttagagagaatatatagatgtatacattta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 catttagagataatatgtatgtgtatacatttagagagaatatatagatgtatacattta 58

                     
Query: 421 gaaaaatcta 430
           ||||||||||
Sbjct: 57  gaaaaatcta 48


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space:   345641
Effective search space used:   345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)