BAC Information

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BAC

Clone NameMSMg01-087A12
Chromosome3 (Build37)
Map Location 132,751,370 - 132,846,923
singlet/doubletdoublet
Overlap geneGstcd, Ints12, 9130221D24Rik
Upstream geneDkk2, LOC100039018, EG433653, LOC668857, Scye1, A630047E20Rik, LOC668858, Npnt
Downstream genePpa2, E130014J05Rik, EG620205, LOC100039168, LOC668862, LOC100039199
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087A12.T7 (MSMg01no087_a12.b1)MSMg01-087A12.TJ (MSMg01no087_a12.g1)
ACCAG306177AG306178
length707700
length of high quality
(start - end)
311 (46 - 356)286 (74 - 359)
definitionCHROMAT_FILE: MSMg01no087_a12.b1 PHD_FILE: MSMg01no087_a12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:00 2005CHROMAT_FILE: MSMg01no087_a12.g1 PHD_FILE: MSMg01no087_a12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(132,846,618 - 132,846,923)(132,751,370 - 132,751,654)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGCATTCCCAGATAGAGTGAAGGATCTAGGGTTCTTCTCACTCC
TCTCAAATACAAAAGAAAGGACCGAGAGGCTGCAAACATTTCAATGGGCA
CCATGTCTATGAGGACAAAGCATTTTTAAGTAAATGCAAAAGCTTGAACC
ATGATAAAAAAGAAGAAAAATTAAGGAAAGAATTGCCAGGTTCCTGTGTG
GTACAAAGTAATTCTTTATTGGTTACTATAGTCTTTGAGTTAATACAATT
TCATAAATCTATTTTTATCTACTGAGAACTTTATATTTAGACATTTATCA
TACACTGAGAGGTACAAATTCAATGTTTTAATTTTTTTTTACCTTTTAAT
TGAAAACCAAGACAACACCTATATTTATGGCTAGAAACATGCTATCTTTA
TATATGCTTACATTGTGAAACGGCTATATTACTTCAACAGTTTATCTGTG
TATTCAATAAGAACACTGAAAATGTACTCTCTCAGCAGCTTTCAGGTATA
TATCATAATATATATGATAATCAGTGGATAACTTCAACTTGTTCCTTCTA
TGCAAAACTTTATGACTTTGACTAGAAACTTTCCAAAGTTAACCAGTCCC
AACCACTTGCAACAACCTTACTCTGTACTTCTGCCACTCTGACGCTGTTT
ATCTCTC
GAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAAGCAAGCTTGGAGATTTTAAGAAGG
GGCTGTTTTAAAATCCAAAAGGCTAAGACATAGCTCAGAGAGTGACTGGC
TTTATATATATATATAATATTTCCTGCCAGAAAATTGCAACAGCAAAACC
TGATATAATGTCATGAGTACTTACTCTATTGCATGGAATAAATCTGATTA
TTTATGCTGTTTTTCCCTTTTCTTTTACGTTATGACTGTTGACTGATTTC
ATGGCCCATTACCAGTACACAAGCCACATCTCAACAGCATTGTTCTATGT
GCTCTGCATTGCCAATGGCTTTAAATATTATCCGACTCCTACATTTATTT
CAGGCACATCTTGCCTGAGCTCCAGGCTCGACATTTCAATTGGGTATTTT
TCTAAATGTGTTCATTTTTCTTTCCTGGCCCCATTGCTGATGAAATACCA
ACACCATTCACCTACCTCCAAGTCTAAAGTCTCACCCAATTCCTTCATCT
CTCACACCTACTATCTCCTTCTTTGAAATAGAACCAAAATCTCATCACTT
AGAACCCACATTGCTGCGCTTAGCACTGCTGGACTGTATGTCTCAAGAAT
GCTGCTACCTAAGAGGGGGTTCCCTTCTCTGATAATTCCAGTTCGCCCCA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_a12.b1 MSMg01no087_a12.b1 CHROMAT_FILE:
MSMg01no087_a12.b1 PHD_FILE: MSMg01no087_a12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:00 2005
         (311 letters)



>mm_chr3_132846414_132847124
          Length = 711

 Score =  530 bits (274), Expect = e-155
 Identities = 298/306 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccagcattcccagatagagtgaaggatctagggttcttctcactcctctcaaata 64
           |||||||||||   ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 510 gaattccagcaggaccagatagagtgaaggatctagggttcttctcacttctctcaaata 451

                                                                       
Query: 65  caaaagaaaggaccgagaggctgcaaacatttcaatgggcaccatgtctatgaggacaaa 124
           ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 caaaagaaagggcagagaggctgcaaacatttcaatgggcaccatgtctatgaggacaaa 391

                                                                       
Query: 125 gcatttttaagtaaatgcaaaagcttgaaccatgataaaaaagaagaaaaattaaggaaa 184
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 390 gcatttttaagtaaatgcaaaagtttgaaccatgataaaaaagaagaaaaattaaggaaa 331

                                                                       
Query: 185 gaattgccaggttcctgtgtggtacaaagtaattctttattggttactatagtctttgag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gaattgccaggttcctgtgtggtacaaagtaattctttattggttactatagtctttgag 271

                                                                       
Query: 245 ttaatacaatttcataaatctatttttatctactgagaactttatatttagacatttatc 304
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 270 ttaatacaatttcataaatctattttcatctactgagaactttatatttagacatttatc 211

                 
Query: 305 atacac 310
           ||||||
Sbjct: 210 atacac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no087_a12.g1 MSMg01no087_a12.g1 CHROMAT_FILE:
MSMg01no087_a12.g1 PHD_FILE: MSMg01no087_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:00 2005
         (286 letters)



>mm_chr3_132751170_132751855
          Length = 686

 Score =  551 bits (285), Expect = e-161
 Identities = 285/285 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagcaagcttggagattttaagaaggggctgttttaaaatccaaaaggctaagacatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagcaagcttggagattttaagaaggggctgttttaaaatccaaaaggctaagacatag 260

                                                                       
Query: 61  ctcagagagtgactggctttatatatatatataatatttcctgccagaaaattgcaacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcagagagtgactggctttatatatatatataatatttcctgccagaaaattgcaacag 320

                                                                       
Query: 121 caaaacctgatataatgtcatgagtacttactctattgcatggaataaatctgattattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaaacctgatataatgtcatgagtacttactctattgcatggaataaatctgattattt 380

                                                                       
Query: 181 atgctgtttttcccttttcttttacgttatgactgttgactgatttcatggcccattacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgctgtttttcccttttcttttacgttatgactgttgactgatttcatggcccattacc 440

                                                        
Query: 241 agtacacaagccacatctcaacagcattgttctatgtgctctgca 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtacacaagccacatctcaacagcattgttctatgtgctctgca 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)