BAC Information

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BAC

Clone NameMSMg01-087D05
Chromosome3 (Build37)
Map Location 147,428,586 - 147,428,778
singlet/doubletsinglet
Overlap genenone
Upstream genePrkacb, LOC100040540, Ttll7, Ppia-ps3_1528.1
Downstream geneLOC100040354
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087D05.T7 (MSMg01no087_d05.b1)MSMg01-087D05.TJ (MSMg01no087_d05.g1)
ACCAG306301AG306302
length710710
length of high quality
(start - end)
200 (47 - 246)123 (78 - 200)
definitionCHROMAT_FILE: MSMg01no087_d05.b1 PHD_FILE: MSMg01no087_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:13 2005CHROMAT_FILE: MSMg01no087_d05.g1 PHD_FILE: MSMg01no087_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTCTGAATAGCTAAGAGACAAAAAAGATGAGGTCCTTGTGAACT
TGGGTCACCATGTCAGCTATACATTTTATCTCTACGGAAATTAAGATGGG
AGTACATCTTCTTGATTGAGGGATAAATATTTGAGAGTTTTCTGGTATCT
GTAATCTTATTTGACCCTACCTCGCTTTATCAGCATAATCTAATAATATA
AGTGTACTGAATGTCATTCGAAGTCACAGTGGATTGACAGCTTGGAGTTG
ATAGAATTAGAGGAACCTGAGTGTTTATTCCGACTACCTATGACATAGGT
ACACATACTCTTTTATTTTGCCTGCCCATGCCAGAGGTAATAGTACCATG
ATATGAATATGAGGTATGGCTCATGTAGAGTAAACTTACAGTCTGTTATA
TGATAGCCACACATACTTTTCCACAGGAATGTTTTTATTACAGTTATATT
TCAGCCCGCCTTATGCATATAGGATGCCCCTTTATCCCACTTTGTTCCCC
CCTACATATTCCTGTCCCACCTGTGATGCATCCGGCTCTTTACTACCTCC
TACCCCACCGCACTTTTTTCTCTCCCTCCCTAGCACTTCGCCCGATCTTC
CTTTCCCCCTGATGCACTGTCCCGCCCTCGCCCTTGATTTGCCTTGTCTT
CACCTAGTCC
CCTATCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATGCCTTTGGAGAGAGGGAAAAT
TAGCCTCTCCCAGGGGTAAGCTCTCCCAGTGATTATTCAATACAAAATGG
TCAACCCTGCTGGGCTCAGTGGTGAACATGTTTAATTCCAGCACTGGCAG
ATGTGAGGCAGGTGAATCACTGTGACTTTGAAGTCGATTTATCCTACTCA
GCGAGTTCCACCACAGCCAGAGTTACACAAAGAGAGCCATTTCCACAAAT
GAATGAATGACTGAATGAATGATACATTAAATAACCGATACAACATTGCC
CACCTCTGAATTCATATACTCCCAAGCCACACTAAGTGACACATTAGTCT
ACGTTTATATATTTATGCACCTGTGTGTGTATGTACACATATGAGTACAT
ACCCGTACCCTTCGAGTAACATTCTTATACAGCCCTTCCGTTTGATCATC
ATTAATGAGCCAGTGCACGCATTTGATACCAGCACATTCGGAACGATGTC
TCAACGCTATTATTATATGCCAATTTCCGCCCCTATGTTTTACCTTCCCA
ATTTTACCCCCCCTTTTTACCACCTATTTCTTGACTATACTTACGCTGAG
ACTGATCTTGTACAGCATTACTTTCCCCACCCTATTTGAACCCCCCCTCT
GATCCCCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_d05.b1 MSMg01no087_d05.b1 CHROMAT_FILE:
MSMg01no087_d05.b1 PHD_FILE: MSMg01no087_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:13 2005
         (200 letters)



>mm_chr3_147428382_147428981
          Length = 600

 Score =  327 bits (169), Expect = 3e-94
 Identities = 187/193 (96%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctctgaatagctaagagacaaaaaagatgaggtccttgtgaacttgggtcacca 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gaattcctctgaagagctaagagacaaaaaagatgaggtccttgtgaacttgggtcacca 338

                                                                       
Query: 65  tgtcagctatacattttatctctacggaaattaagatgggagtacatcttcttgattgag 124
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 337 tgtcagctatacattttatctctacggaaagtaagatgggagtacatcttcttgattgag 278

                                                                       
Query: 125 ggataaatatttgagagttttctggtatctgtaatcttatttgaccctacctcgctttat 184
           |||||||||||| ||||||||||||||| |||||||  ||||||||||||||||||||||
Sbjct: 277 ggataaatattttagagttttctggtatatgtaatcaaatttgaccctacctcgctttat 218

                        
Query: 185 cagcataatctaa 197
           |||||||||||||
Sbjct: 217 cagcataatctaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 200
Length of database: 600
Length adjustment: 8
Effective length of query: 192
Effective length of database: 592
Effective search space:   113664
Effective search space used:   113664
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)