Query= MSMg01no087_i01.b1 MSMg01no087_i01.b1 CHROMAT_FILE:
MSMg01no087_i01.b1 PHD_FILE: MSMg01no087_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:39 2005
(473 letters)
>mm_chr3_124596248_124597120
Length = 873
Score = 880 bits (455), Expect = 0.0
Identities = 464/467 (99%)
Strand = Plus / Minus
Query: 7 gaattcactaagcccttcactgttgtttattgtattgacattgccagtccagtctagtct 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 gaattcactaagcccttcactgttgtttattgtattgacattgccagtccagtctagtct 614
Query: 67 cccaaagagccaaagtagatgaaaacttcaaagttttatatttatatcttgattcactcc 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 cccaaagagccaaagtagatgaaaacttcaaagttttatatttatatcttgattcactcc 554
Query: 127 atttggatttattgcactgtgacaaatttatgagcagagctttgcccactctgaagattc 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 atttggatttattgcactgtgacaaatttatgagcagagctttgcccactctgaagattc 494
Query: 187 tgctagtgtttcattatgaaatataaaatacatctgcagcatcatacaaaggccccatga 246
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 493 tgctagtgtttcattatgaaatataaaatacatctgcaggatcatacaaaggccccatga 434
Query: 247 ttgagagcagcctttgctaggtatcaacagcactacattgtttcacattgttgctagttt 306
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 433 ttgagagcagcctttgctaggtatcaacagcactgcattgtttcacattgttgctagttt 374
Query: 307 ctcttttatacccttgatatttattttatatagtttctgagttatctcctgagagctttt 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ctcttttatacccttgatatttattttatatagtttctgagttatctcctgagagctttt 314
Query: 367 gtatgttgtcctgtctctacactggcctaatatctccatactgttttgtggaatgcattt 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gtatgttgtcctgtctctacactggcctaatatctccatactgttttgtggaatgcattt 254
Query: 427 tgacgtgattttaaaatctatagtatatttataaaggtctagttgtt 473
|||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tgacatgattttaaaatctatagtatatttataaaggtctagttgtt 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space: 399569
Effective search space used: 399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no087_i01.g1 MSMg01no087_i01.g1 CHROMAT_FILE:
MSMg01no087_i01.g1 PHD_FILE: MSMg01no087_i01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:39 2005
(618 letters)
>mm_chr3_124503989_124505006
Length = 1018
Score = 1083 bits (560), Expect = 0.0
Identities = 597/618 (96%), Gaps = 14/618 (2%)
Strand = Plus / Plus
Query: 1 tctgcttataagtttcccatggatgccaggtgctccacgtttgtgatttgaaattcaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgcttataagtttcccatggatgccaggtgctccacgtttgtgatttgaaattcaaaa 260
Query: 61 agacatttgtaaagaagtgaaaacacactcaaagttgttttgctcctgggtaacagtggt 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 agacatttgtaaagaagtgaaaacacactcaaagttgtgttgctcctgggtaacagtggt 320
Query: 121 gaaactgggtttatttgttcctgcaaaagtgagaaagaacgttctatagcatattgtttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaactgggtttatttgttcctgcaaaagtgagaaagaacgttctatagcatattgtttc 380
Query: 181 taacagtagggactgaagctccaagaaattgtgattaggtctctttctggatgcattttc 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 taacagtagggactgaagctccaagaaattgtgattaggtctctttctggctgcattttc 440
Query: 241 tctaaaggttgtcttttcttaaaacaacaggtcctgcctatagacaaaaagttttgctct 300
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 tctaaaggttgtcttttcttaaaacaacaggtcctgcatatagacaaaaagttttgctct 500
Query: 301 aaacgagaatatagaaaccattttgaaaggattataaaatacagtagatattgcaaaata 360
|||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 aaacgagaatatagaaaccattttgaaaggattata--------------ttgcaaaata 546
Query: 361 tagctttgtagcaacacttcccctatcccaggtaccaacaggcactctcctaagacatta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tagctttgtagcaacacttcccctatcccaggtaccaacaggcactctcctaagacatta 606
Query: 421 gctgagggtccccatgtaatagacatccgggtgctcttatgtggtaagcaagtttaaaga 480
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 gctgagggtccacatgtaatagacatccgggtgctcttatgtggtaagcaagtttaaaga 666
Query: 481 gtgggtattgatagtcacattttctgctccccaacccttccctgtcttctgtccatgaac 540
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 667 gtgggtattgatagtcacattttcagctccccaccccttccctgtcttctgtccatgaac 726
Query: 541 caaagagcctgaactctgctctaagctcctgctaggctatctgtctatctgtgctctaac 600
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 727 caaagagcctgaactctgctctaagctcctgctaggctgtctgtctatctgtgctctaac 786
Query: 601 ttttctaataaacgcctc 618
||||||||||||||||||
Sbjct: 787 ttttctaataaacgcctc 804
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space: 612864
Effective search space used: 612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
