BAC Information

Click to search

BAC

Clone NameMSMg01-088E13
Chromosome3 (Build37)
Map Location 126,864,389 - 126,864,558
singlet/doubletsinglet
Overlap geneLOC100043749
Upstream geneArsj, Camk2d, Ank2
Downstream geneLOC100043361, LOC100043364, Larp7, 4930422G04Rik, Neurog2, Alpk1, T2bp, BC002199, 5730508B09Rik, LOC100043382
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088E13.T7 (MSMg01no088_e13.b1)MSMg01-088E13.TJ (MSMg01no088_e13.g1)
ACCAG307083AG307084
length746683
length of high quality
(start - end)
172 (48 - 219)284 (73 - 356)
definitionCHROMAT_FILE: MSMg01no088_e13.b1 PHD_FILE: MSMg01no088_e13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:42 2005CHROMAT_FILE: MSMg01no088_e13.g1 PHD_FILE: MSMg01no088_e13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCATCCTGCTCAGGCATCTCCTCCCAATGCAGCAAATTCAGGCG
AGAGCTCCTCTGAGCTTTTAACCGCGCTCGGAAATGGTGCAGGGGAGGGA
TGGAAAAGGGAGGATGAAGTTGTCAGTTCTAAAGGCTGAAGATTCTACAC
GGCGCTACAAAAGGGCGCGCCGTGGGGGTAGGGTACTGCACACTACCCCC
CCCCCTACCTTTCTTCTCCGTTCCCTCCCATCCCTGTTTATTCTCCGCCC
GCCTTCTTCTCCTTCTCTTCTTTTTTTTTTTTTTATCCTCCCTCTTTAAT
CCCATCTATCTTTTTTTTCTCCCCCCCCCCTCTCCCCTTTTTCCTCTCCT
GCTCTGTTTCTCCTTTTACCCCCCCCTCCCTCCATTTCTCCCTTCTTTTC
GCTTTACTCCTTTCTCACTTCCCTCCTTTCTCCCTTCCTATCTTACCCTC
CTCTTCTTACCGCCTTATCCTTCTCTTTCTTTTTCTCCCCTCCCCCCTCC
TTTGTTTTTCCCCTTTTTTTCTCCCTTCCTCCTTTCCCCCCACCTTTCCT
TTTTTAATCCCTATACTCTTTTCCTTTCCTTTTCCCCTTCTATTTTTACC
TTCTTTTTCTCTTTCTGTCGTCCCTCTACTCCTCTCTCTTCCACTGCCTT
TCTCTTCCCTTTCTCTTTTATCCTCCTTTTCCCCTTCTCTCCCCTG
ATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTTTTTTATAATTTATTAATTATTATT
CTATTATTTATCTTCCCCAAGATCCTTGTGCATGCTAGAAAAGTGGTCTA
GCTTGCCCTGCACATGTTTGAGGCAGGATCTCACTATATAGTGTAGGCTG
GCTTGACCTTGAATCCTCCTGCCATGGCCTTCTGAGTGCTGGGATCGCAG
GGAGGCACCCATACACCCAATCATTTCATGGTCATTTGCTCATTTATTTC
CTAGATGGTTTTAGGCTGTTCAGTATAAATTTGGGGTCCTTTATGAACAG
TGTCTTTCACACATGCCCATACCAGTTATGGAGGAATATTGGAGATTGTC
TTTAGAAGCCACCACCTTCACAGTCACAGCCGAATGTTTCTCAGAGTAAA
AACGAAGCAAGTGCTTTCAAGAGTATATATAACAAAAAATTATGTAGGTC
CCCCTGCCCTGCCAACTCCTCAAATTCCTAGTGCAGGGCAAGTTTTCTGC
ACTTGTACGCAAATGTTTAGAGACTAGGATGTCTTACAGAGCTCATCTGA
CAATGTTGTAGTTTGCCTCTTTCCTTGCGTACCTCAGCTTGCGTTTCATC
TTTTCATCTTCTTCCCACTTTATAATCTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_e13.b1 MSMg01no088_e13.b1 CHROMAT_FILE:
MSMg01no088_e13.b1 PHD_FILE: MSMg01no088_e13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:42 2005
         (172 letters)



>mm_chr3_126864186_126864758
          Length = 573

 Score =  259 bits (134), Expect = 6e-74
 Identities = 161/170 (94%), Gaps = 1/170 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccatcctgctcaggcatctcctcccaatgcagcaaattcaggcgagagctcctc 63
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 204 ggaattccatcctgctcaggcatctcctcccaatgcagcaaatccaggcgagagctcctc 263

                                                                       
Query: 64  tgagcttttaaccgcgctcggaaatggtgcaggggagggatggaaaag-ggaggatgaag 122
           ||||||   ||  | ||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 264 tgagctgcaaagtgtgctcggaaatggtgcaggggagggatggaaaaaaggaggatgaag 323

                                                             
Query: 123 ttgtcagttctaaaggctgaagattctacacggcgctacaaaagggcgcg 172
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttgtcagttctaaaggctgaagattctacacggcgctacaaaagggcgcg 373


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 172
Length of database: 573
Length adjustment: 8
Effective length of query: 164
Effective length of database: 565
Effective search space:    92660
Effective search space used:    92660
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)