Query= MSMg01no088_j11.b1 MSMg01no088_j11.b1 CHROMAT_FILE:
MSMg01no088_j11.b1 PHD_FILE: MSMg01no088_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:07 2005
(562 letters)
>mm_chr3_138418697_138419661
Length = 965
Score = 841 bits (435), Expect = 0.0
Identities = 507/539 (94%), Gaps = 15/539 (2%)
Strand = Plus / Minus
Query: 5 gaattcatggtctgctcttcatgataggagttctgttctatccaggacagtctgaagaac 64
|||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 533 gaattcatggcctggtcttcatgataggaattctgttctatccaggacagtctgaagagc 474
Query: 65 gctga------tttcacccgctggacctacttttcttcagttattctgagaatacacttg 118
|||| || |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 473 actgagaacagtt------gctggatctacttttcttcagttattctgagaatacacttg 420
Query: 119 cgaagagaacagaaagtatatgttacatggtaccattatcttaacggtcctgaagaaggg 178
|| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 cgcagagagcagaaagtgtatgttacatggtaccattatcttaacggtcctgaagaaggg 360
Query: 179 atggaaagctaacgaaagacatgatgaggttgagaaaccagtaataactgccaatacaga 238
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 359 atggaaagctaacgaaagacatgatggggttgagaaaccagtagtaactgccaatacaga 300
Query: 239 tgggacattcaggcagcttacacatctttcctctcatcctcacaactgagatag---att 295
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 299 tgggacattcaggcagcttacacatctttcctctcatcctcacaactgagatagattatt 240
Query: 296 caaggttttaatagtcccattaagaatattaattagggctggagcgatggctcagtagtt 355
| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 239 ctaggttttaatagtcccgttaagaatattaattagggctggagagatggctcagtagtt 180
Query: 356 aagagcactgacggctcttccagaagtcctgagttcaattcccagcaaccacatggtggc 415
|||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 179 aagaacactgacagctcttccagaggtcctgagttcaattcccagcaaccacatggtggc 120
Query: 416 tcacaaccatctctaatgggatccgatgccctcttctggtgtgtctgaacacacctacag 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 tcacaaccatctctaatgggatccgatgccctcttctggtgtgtctgaacacacctacag 60
Query: 476 tggactcatatacataaaataaatctttaaaaagaaaaacagaatagtaattaaccagt 534
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 tggactcatatacataaaataaatctttaaaaagaaaaacagaatagtaattaaccagt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 965
Length adjustment: 10
Effective length of query: 552
Effective length of database: 955
Effective search space: 527160
Effective search space used: 527160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no088_j11.g1 MSMg01no088_j11.g1 CHROMAT_FILE:
MSMg01no088_j11.g1 PHD_FILE: MSMg01no088_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:07 2005
(520 letters)
>mm_chr3_138349799_138350711
Length = 913
Score = 839 bits (434), Expect = 0.0
Identities = 497/522 (95%), Gaps = 11/522 (2%)
Strand = Plus / Plus
Query: 1 ttggagcaagcagcatgtggtgacagagaacgggtgcaaaggaaggcacagagagtttag 60
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 201 ttggagcaagcagcatgtggtgacagagaacgggtgcaaaggaagggacagagagtttgg 260
Query: 61 aggagtggttcgagacacaggaatctggagcctgagcatgaagacccgaaa-caggatct 119
||||||||||| ||||||||||||||||||||||||||||| |||| ||| ||||||||
Sbjct: 261 aggagtggttcaagacacaggaatctggagcctgagcatgaccaccc-aaagcaggatct 319
Query: 120 gtccttgtttggttatttaaggggatcaaggatcaagggtgacctccttctgtttcactg 179
| ||||||||||||||||||||||||||||||| |||||||||||| |||| |||| |||
Sbjct: 320 gcccttgtttggttatttaaggggatcaaggattaagggtgacctctttctctttcgctg 379
Query: 180 gggaactggggcataaacagggcatcatgtggctttatgaataagaaatttaattgtttt 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 380 gggaactggggcataaacagggcatcatgtggctttatgaataagaaatttaattggttt 439
Query: 240 ccagtcatttttttt-gtcaccaaggtcagagttccttttagacatggataatgataggc 298
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ccagtcatttttttttgtcaccaaggtcagagttccttttagacatggataatgataggc 499
Query: 299 acacaggacttgagcaatttaatttctattctagagcccatacatcaaacacttagttcc 358
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 500 acacagggcttgagcaatttaatttctattctagagcccatacaccaaacacttagttcc 559
Query: 359 ctctgcccagcttttctgttcttggcataattatgttaacaaagcatccctcccgccccc 418
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 560 ctctgcccagcttttctgttcttggcataattatgttaacaaagcatccc-----ccccc 614
Query: 419 tcccccccattggaaagaataacagagctgagtgctggtggctggcttcctgtgtcctct 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ---cccccattggaaagaataacagagctgagtgctggtggctggcttcctgtgtcctct 671
Query: 479 gtaccagtacattggattagagggaaatctaacaagagtaat 520
||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 672 gtaccagtacattggattagagggaaatccaacaagagtaat 713
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 913
Length adjustment: 10
Effective length of query: 510
Effective length of database: 903
Effective search space: 460530
Effective search space used: 460530
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
